SMTL ID : 4bfd.1

CRYSTAL STRUCTURE OF BACE-1 IN COMPLEX WITH CHEMICAL LIGAND

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x 8T3: N-[3-[(1S,3S,6S)-5-azanyl-3-methyl-4-azabicyclo[4.1.0]hept-4-en-3-yl]-4-fluoranyl-phenyl]-5-chloranyl-pyridine-2-carbox amide(Non-covalent)

8T3.1: 17 residues within 4Å: Chain A: G.27, Q.28, G.29, L.46, D.48, G.50, Y.87, F.124, I.126, W.131, I.134, D.244, S.245, G.246, T.247, T.248, A.351 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.87, A:F.124, A:I.134 Hydrogen bonds: A:D.48, A:G.246, A:T.247

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 2 residues within 4Å: Chain A: H.197, Y.200 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.200 Water bridges: A:Y.200 NA.3: 2 residues within 4Å: Chain A: V.157, T.160 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.157

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 6 residues within 4Å: Chain A: R.112, A.113, N.114, E.150, S.155, Q.159 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.114, A:S.155 Water bridges: A:N.114 Salt bridges: A:E.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Woltering, T.J. et al., Bace1 Inhibitors: A Head Group Scan on a Series of Amides. Bioorg.Med.Chem.Lett. (2013)

Release Date

2013-06-19

Peptides

BETA-SECRETASE 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BETA-SECRETASE 1

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