SMTL ID : 3zty.1

The 3-dimensional structure of the gadolinium derivative of MpgP, the mannosyl-3-phosphoglycerate phosphatase from Thermus thermophilus HB27

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

6 x GD: GADOLINIUM ATOM(Non-covalent)

GD.1: 4 residues within 4Å: Chain A: D.6, D.8, D.202 Ligands: GD.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.6, A:D.8, A:D.202, A:D.202 GD.2: 4 residues within 4Å: Chain A: E.14, D.202 Ligands: GD.1, GD.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.14 GD.3: 2 residues within 4Å: Chain A: G.165 Ligands: GD.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:G.165 GD.5: 6 residues within 4Å: Chain B: D.6, D.8, D.202 Ligands: GD.6, GD.7, CL.8 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.6, B:D.8, B:D.202, H2O.4 GD.6: 3 residues within 4Å: Chain B: G.165 Ligands: GD.5, GD.7 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:G.165 GD.7: 5 residues within 4Å: Chain B: E.14, D.202, S.203 Ligands: GD.5, GD.6 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.14, B:D.202, H2O.6

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: D.6, L.7, D.8, T.39 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain B: D.6, D.8, T.39 Ligands: GD.5 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goncalves, S. et al., The Three-Dimensional Structure of Mannosyl-3-Phosphoglycerate Phosphatase from Thermus Thermophilus Hb27: A New Member of the Haloalkanoic Acid Dehalogenase Superfamily. Biochemistry (2011)

Release Date

2011-10-19

Peptides

MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE

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