SMTL ID : 3zx5.1

The 3-dimensional structure of MpgP from Thermus thermophilus HB27, covalently bound to vanadate and in complex with alpha- mannosylglycerate and magnesium

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: D.6, D.8, D.202, D.206 Ligands: VN4.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.6, A:D.8, A:D.202, H2O.1, H2O.1 MG.4: 4 residues within 4Å: Chain B: D.6, D.8, D.202 Ligands: VN4.5 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.6, B:D.8, B:D.202, H2O.7, H2O.8

2 x VN4: oxido(dioxo)vanadium(Non-covalent)

VN4.2: 10 residues within 4Å: Chain A: D.6, L.7, D.8, T.39, A.40, N.59, K.177, N.205 Ligands: MG.1, 2M8.3 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:L.7, A:D.8, A:D.8, A:D.8, A:T.39, A:A.40, A:K.177, A:N.205 VN4.5: 9 residues within 4Å: Chain B: D.6, L.7, D.8, T.39, A.40, K.177, N.205 Ligands: MG.4, 2M8.6 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:L.7, B:D.8, B:T.39, B:A.40, B:K.177, B:N.205 Water bridges: B:G.166

2 x 2M8: (2R)-3-hydroxy-2-(alpha-D-mannopyranosyloxy)propanoic acid(Non-covalent)

2M8.3: 15 residues within 4Å: Chain A: D.8, A.40, K.41, E.45, Y.110, L.124, A.132, R.135, T.140, G.165, G.166, R.167, F.168, H.170 Ligands: VN4.2 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:D.8, A:A.40, A:E.45, A:Y.110, A:R.135, A:R.135, A:T.140, A:T.140, A:G.165, A:G.166, A:R.167, A:R.167, A:F.168 Water bridges: A:D.8, A:D.8, A:S.203 Salt bridges: A:K.41, A:H.170, A:H.170 2M8.6: 13 residues within 4Å: Chain B: D.8, A.40, K.41, E.45, Y.110, R.135, T.140, G.165, G.166, R.167, F.168, H.170 Ligands: VN4.5 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:A.40, B:K.41, B:E.45, B:R.135, B:R.135, B:T.140, B:G.165, B:G.166, B:R.167, B:R.167, B:F.168 Water bridges: B:D.8, B:R.167 Salt bridges: B:H.170, B:H.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goncalves, S. et al., The Three-Dimensional Structure of Mannosyl-3-Phosphoglycerate Phosphatase from Thermus Thermophilus Hb27: A New Member of the Haloalkanoic Acid Dehalogenase Superfamily. Biochemistry (2011)

Release Date

2011-10-19

Peptides

MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE

Related Entries With Identical Sequence