SMTL ID : 3zw7.1

The 3-dimensional structure of MpgP from Thermus thermophilus HB27, in complex with the alpha-mannosylglycerate and metaphosphate.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: D.6, D.8, D.202 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.6, A:D.8, A:D.202, H2O.1, H2O.9 MG.4: 6 residues within 4Å: Chain B: D.6, D.8, G.165, D.202, S.203 Ligands: PO3.5 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.6, B:D.8, B:D.202, B:S.203, H2O.10

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 5 residues within 4Å: Chain A: G.165, G.166, R.167, F.168, H.170 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.165, A:G.165, A:R.167, A:F.168 Water bridges: A:Y.110 Salt bridges: A:H.170

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: D.6, L.7, D.8, T.39, A.40 Ligand excluded by PLIP

1 x PO3: PHOSPHITE ION(Non-covalent)

PO3.5: 10 residues within 4Å: Chain B: D.6, L.7, D.8, T.39, A.40, G.165, K.177, N.205 Ligands: MG.4, 2M8.6 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:D.6, B:L.7, B:D.8, B:T.39, B:A.40, B:N.205 Salt bridges: B:K.177

1 x 2M8: (2R)-3-hydroxy-2-(alpha-D-mannopyranosyloxy)propanoic acid(Non-covalent)

2M8.6: 13 residues within 4Å: Chain B: D.8, A.40, K.41, E.45, Y.110, R.135, T.140, G.165, G.166, R.167, F.168, H.170 Ligands: PO3.5 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:A.40, B:K.41, B:E.45, B:R.135, B:R.135, B:T.140, B:G.165, B:R.167, B:R.167, B:F.168 Salt bridges: B:H.170, B:H.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goncalves, S. et al., The Three-Dimensional Structure of Mannosyl-3-Phosphoglycerate Phosphatase from Thermus Thermophilus Hb27: A New Member of the Haloalkanoic Acid Dehalogenase Superfamily. Biochemistry (2011)

Release Date

2011-10-19

Peptides

MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MANNOSYL-3-PHOSPHOGLYCERATE PHOSPHATASE

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