SMTL ID : 4a6b.1

Stereoselective Synthesis, X-ray Analysis, and Biological Evaluation of a New Class of Lactam Based HIV-1 Protease Inhibitors

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

1 x QG8: METHYL ((S)-1-(2-([1,1'-BIPHENYL]-4-YLMETHYL)-2-(3-((3S,4S)-3-BENZYL-4-HYDROXY-1-((1S,2R)-2-HYDROXY-2,3-DIHYDRO-1H-INDEN-1-YL)-2-OXOPYRROLIDIN-3-YL)PROPYL)HYDRAZINYL)-3,3-DIMETHYL-1-OXOBUTAN-2-YL)CARBAMATE(Non-covalent)

QG8.1: 25 residues within 4Å: Chain A: R.8, D.25, G.27, A.28, D.30, I.47, G.48, G.49, I.50, L.76, P.81, T.82 Chain B: L.23, D.25, G.27, A.28, D.29, I.47, G.48, G.49, I.50, F.53, P.81, T.82, V.84 23 PLIP interactions: 14 interactions with chain B, 9 interactions with chain A Hydrophobic interactions: B:L.23, B:A.28, B:I.47, B:I.50, B:I.50, B:F.53, B:F.53, B:P.81, B:V.84, A:A.28, A:I.47, A:I.47, A:L.76, A:P.81, A:P.81, A:T.82 Hydrogen bonds: B:G.27, B:D.29, B:G.48, A:D.25 Water bridges: B:I.50, B:I.50 Salt bridges: A:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, X. et al., Synthesis, X-Ray Analysis, and Biological Evaluation of a New Class of Stereopure Lactam-Based HIV-1 Protease Inhibitors. J.Med.Chem. (2012)

Release Date

2012-05-09

Peptides

POL PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

POL PROTEIN

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