SMTL ID : 4cpx.1

Macrocyclic Transition-State Mimicking HIV-1 Protease Inhibitors Encompassing a Tertiary Alcohol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: G.73, T.74, N.88 Ligand excluded by PLIP CL.3: 1 residues within 4Å: Chain B: W.6 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain B: G.73, T.74, N.88 Ligand excluded by PLIP

1 x J3W: methyl ~{N}-[(2~{S})-3,3-dimethyl-1-[2-[3-[(3~{R},6~{S},10~{Z})-3-oxidanyl-4,7-bis(oxidanylidene)-6-propan-2-yl-5,8-diazabicyclo[11.2.2]heptadeca-1(16),10,13(17),14-tetraen-3-yl]propyl]-2-[(4-thiophen-2-ylphenyl)methyl]hydrazinyl]-1-oxidanylidene-butan-2-yl]carbamate(Non-covalent)

J3W.2: 22 residues within 4Å: Chain A: R.8, D.25, G.27, A.28, D.29, G.48, G.49, I.50, P.81, T.82 Chain B: R.8, L.23, D.25, G.27, A.28, D.29, D.30, G.48, G.49, I.50, P.81, T.82 22 PLIP interactions: 9 interactions with chain B, 13 interactions with chain A Hydrophobic interactions: B:L.23, B:A.28, B:I.50, B:P.81, A:A.28, A:I.50, A:I.50, A:P.81, A:P.81, A:T.82 Hydrogen bonds: B:G.27, B:D.29, B:G.48, B:I.50, A:G.27, A:G.27, A:D.29, A:G.48 Water bridges: B:G.48, A:G.48, A:I.50 Salt bridges: A:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De Rosa, M. et al., Synthesis of P1'-functionalized macrocyclic transition-state mimicking HIV-1 protease inhibitors encompassing a tertiary alcohol. J. Med. Chem. (2014)

Release Date

2014-12-17

Peptides

PROTEASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

PROTEASE

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