SMTL ID : 4abq.1

CRYSTAL STRUCTURE OF TRANSTHYRETIN IN COMPLEX WITH LIGAND C-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

4 x 4V2: 3-(5-MERCAPTO-1,3,4-OXADIAZOL-2-YL)-PHENOL(Non-covalent)

4V2.1: 12 residues within 4Å: Chain A: L.17, A.108, L.110, S.117, T.118, T.119 Chain C: K.15, L.17, A.108, L.110, S.117 Ligands: 4V2.3 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: C:L.110, C:L.110, A:A.108 Hydrogen bonds: A:L.110 4V2.2: 8 residues within 4Å: Chain B: T.106, A.108, S.117, T.119 Chain D: K.15, L.17, T.119 Ligands: 4V2.4 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain D Hydrophobic interactions: B:A.108, D:L.17, D:T.119 4V2.3: 12 residues within 4Å: Chain A: K.15, L.17, A.108, L.110, S.117 Chain C: L.17, A.108, L.110, S.117, T.118, T.119 Ligands: 4V2.1 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain A Hydrophobic interactions: C:A.108, A:L.110, A:L.110 Hydrogen bonds: C:L.110 4V2.4: 8 residues within 4Å: Chain B: K.15, L.17, T.119 Chain D: T.106, A.108, S.117, T.119 Ligands: 4V2.2 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain D Hydrophobic interactions: B:L.17, B:T.119, D:A.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tomar, D. et al., Crystallographic Study of Novel Transthyretin Ligands Exhibiting Negative-Cooperativity between Two Thyroxine Binding Sites. Plos One (2012)

Release Date

2012-09-26

Peptides

TRANSTHYRETIN: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

TRANSTHYRETIN

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