SMTL ID : 4anj.1

MYOSIN VI (MDinsert2-GFP fusion) PRE-POWERSTROKE STATE (MG.ADP.AlF4)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 19 residues within 4Å: Chain A: N.98, P.99, Y.100, F.101, D.102, Y.107, S.153, G.154, A.155, G.156, K.157, T.158, E.159, F.163, N.200, N.202, L.310 Ligands: MG.2, ALF.3 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:N.98, A:Y.107, A:G.154, A:A.155, A:G.156, A:K.157, A:T.158, A:T.158, A:E.159, A:N.200, A:N.200 Water bridges: A:S.204, A:S.204, A:S.204 Salt bridges: A:K.157

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: T.158, S.204 Ligands: ADP.1, ALF.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.158, A:S.204, H2O.2, H2O.2

1 x ALF: TETRAFLUOROALUMINATE ION(Non-covalent)

ALF.3: 11 residues within 4Å: Chain A: S.153, G.154, K.157, N.200, S.203, S.204, I.457, A.458, G.459 Ligands: ADP.1, MG.2 No protein-ligand interaction detected (PLIP)

3 x CA: CALCIUM ION(Non-covalent)

CA.4: 5 residues within 4Å: Chain B: D.57, N.61, G.62, T.63, E.68 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.57, B:T.63 CA.5: 4 residues within 4Å: Chain B: D.94, D.96, N.98, F.100 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:F.100 CA.6: 6 residues within 4Å: Chain B: D.130, D.132, Q.136, V.137, N.138, E.141 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.132, B:Q.136, B:E.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Menetrey, J. et al., Processive Steps in the Reverse Direction Require Uncoupling of the Lead Head Lever Arm of Myosin Vi. Mol.Cell (2012)

Release Date

2012-10-17

Peptides

UNCONVENTIONAL MYOSIN-VI, GREEN FLUORESCENT PROTEIN: A
CALMODULIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

UNCONVENTIONAL MYOSIN-VI, GREEN FLUORESCENT PROTEIN

CALMODULIN

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