SMTL ID : 4au0.1 (1 other biounit)

Hypocrea jecorina Cel6A D221A mutant soaked with 6-chloro-4- methylumbelliferyl-beta-cellobioside

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x BGC- BGC: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-BGC.1: 13 residues within 4Å: Chain A: D.91, A.94, N.145, H.182, G.184, W.185, V.219, A.220, N.221, W.280, G.281, W.283 Ligands: XZZ.12 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.91, A:D.91, A:V.219, A:N.221 Water bridges: A:D.91

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: L.159, E.160, N.163, N.205 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.205 Water bridges: A:S.156, A:E.160 NAG.3: 5 residues within 4Å: Chain A: W.225, N.226, T.228, T.299, F.307 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.228 Hydrogen bonds: A:N.226, A:T.299

8 x MAN: alpha-D-mannopyranose(Post Translational Modification)

MAN.4: 2 residues within 4Å: Chain A: T.3, Y.4 2 PLIP interactions: 2 interactions with chain A Water bridges: A:T.1, A:T.3 MAN.5: 4 residues within 4Å: Chain A: V.12, T.13, N.77, Y.78 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.77, A:N.77, A:Y.78 MAN.6: 5 residues within 4Å: Chain A: Y.19, S.22, E.23, L.27 Ligands: MAN.8 No protein-ligand interaction detected (PLIP) MAN.7: 5 residues within 4Å: Chain A: A.21, S.25, A.41, A.44, K.45 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.41, A:K.45 Water bridges: A:K.45 MAN.8: 3 residues within 4Å: Chain A: S.22, S.26 Ligands: MAN.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.22 Water bridges: A:S.26 MAN.9: 3 residues within 4Å: Chain A: L.27, S.31, Q.348 No protein-ligand interaction detected (PLIP) MAN.10: 2 residues within 4Å: Chain A: G.34, T.38 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.34 MAN.11: 5 residues within 4Å: Chain A: Y.4, S.5, G.6, N.7, V.10 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.5, A:G.6, A:N.7 Water bridges: A:R.129

1 x XZZ: 6-chloro-7-hydroxy-4-methyl-2H-chromen-2-one(Non-covalent)

XZZ.12: 7 residues within 4Å: Chain A: G.184, W.185, W.188, Q.279, W.280, G.281 Ligands: BGC-BGC.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.188 Hydrogen bonds: A:W.280, A:G.281 Halogen bonds: A:W.185

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, M. et al., Rational Design, Synthesis, Evaluation and Enzyme-Substrate Structures of Improved Fluorogenic Substrates for Family 6 Glycoside Hydrolases. FEBS J. (2013)

Release Date

2013-01-23

Peptides

EXOGLUCANASE 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

EXOGLUCANASE 2

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