SMTL ID : 4ax7.2 (3 other biounits)

Hypocrea jecorina Cel6A D221A mutant soaked with 4-Methylumbelliferyl- beta-D-cellobioside

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x BGC- BGC: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-BGC.1: 12 residues within 4Å: Chain A: W.51, D.53, Y.85, A.220, W.283, K.311, P.312, E.315, D.317, A.343, G.344 Ligands: 4MU.11 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.53, A:E.315 Water bridges: A:D.53, A:K.57, A:R.90, A:R.90, A:R.90

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: L.159, E.160, N.163, N.205 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.205 Water bridges: A:N.163 NAG.3: 5 residues within 4Å: Chain A: W.225, N.226, T.228, T.299, F.307 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.228 Hydrogen bonds: A:N.226, A:T.299

7 x MAN: alpha-D-mannopyranose(Post Translational Modification)

MAN.4: 2 residues within 4Å: Chain A: T.3, Y.4 2 PLIP interactions: 2 interactions with chain A Water bridges: A:T.1, A:T.1 MAN.5: 3 residues within 4Å: Chain A: T.13, N.77, Y.78 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.77 Water bridges: A:Y.78 MAN.6: 5 residues within 4Å: Chain A: Y.19, S.22, E.23, L.27 Ligands: MAN.8 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.19 MAN.7: 5 residues within 4Å: Chain A: A.21, S.25, A.41, A.44, K.45 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.45, A:K.45 MAN.8: 3 residues within 4Å: Chain A: S.22, S.26 Ligands: MAN.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.22 MAN.9: 3 residues within 4Å: Chain A: L.27, S.31, Q.348 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.348 MAN.10: 2 residues within 4Å: Chain A: G.34, T.38 No protein-ligand interaction detected (PLIP)

1 x 4MU: 7-hydroxy-4-methyl-2H-chromen-2-one(Non-covalent)

4MU.11: 6 residues within 4Å: Chain A: D.91, A.93, A.94, W.283, D.328 Ligands: BGC-BGC.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.94, A:W.283 pi-Stacking: A:W.283, A:W.283, A:W.283

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, M. et al., Rational Design, Synthesis, Evaluation and Enzyme-Substrate Structures of Improved Fluorogenic Substrates for Family 6 Glycoside Hydrolases. FEBS J. (2013)

Release Date

2013-01-23

Peptides

EXOGLUCANASE 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

EXOGLUCANASE 2

Related Entries With Identical Sequence