SMTL ID : 4ax6.2 (1 other biounit)

HYPOCREA JECORINA CEL6A D221A MUTANT SOAKED WITH 6-CHLORO-4- PHENYLUMBELLIFERYL-BETA-CELLOBIOSIDE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x BGC- BGC: beta-D-glucopyranose-(1-4)-beta-D-glucopyranose(Non-covalent)

BGC-BGC.1: 15 residues within 4Å: Chain A: W.51, D.53, Y.85, S.97, P.136, A.137, A.220, W.283, K.311, P.312, E.315, D.317, A.343, G.344 Ligands: UWU.9 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:D.53, A:D.53, A:K.311, A:E.315, A:E.315 Water bridges: A:D.53, A:K.57, A:R.90, A:R.90, A:R.90

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 5 residues within 4Å: Chain A: S.156, L.159, E.160, N.163, N.205 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.159 Hydrogen bonds: A:N.205 Water bridges: A:N.163 NAG.3: 5 residues within 4Å: Chain A: W.225, N.226, T.228, T.299, F.307 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.228 Hydrogen bonds: A:N.226

5 x MAN: alpha-D-mannopyranose(Post Translational Modification)

MAN.4: 2 residues within 4Å: Chain A: T.13, N.77 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.77 MAN.5: 5 residues within 4Å: Chain A: A.21, S.25, A.41, A.44, K.45 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.41, A:K.45 MAN.6: 2 residues within 4Å: Chain A: S.22, S.26 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.22 MAN.7: 3 residues within 4Å: Chain A: L.27, S.31, Q.348 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.27 Water bridges: A:Q.348 MAN.8: 2 residues within 4Å: Chain A: G.34, T.38 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.34

1 x UWU: 6-chloranyl-7-oxidanyl-4-phenyl-chromen-2-one(Non-covalent)

UWU.9: 11 residues within 4Å: Chain A: D.91, A.93, A.94, H.182, W.185, V.219, A.220, N.221, G.281, W.283 Ligands: BGC-BGC.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.185 Water bridges: A:D.91, A:A.94 pi-Stacking: A:W.185, A:W.185, A:W.283, A:W.283

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, M. et al., Rational Design, Synthesis, Evaluation and Enzyme-Substrate Structures of Improved Fluorogenic Substrates for Family 6 Glycoside Hydrolases. FEBS J. (2013)

Release Date

2013-01-23

Peptides

EXOGLUCANASE 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

EXOGLUCANASE 2

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