SMTL ID : 4ayp.1

Structure of The GH47 processing alpha-1,2-mannosidase from Caulobacter strain K31 in complex with thiomannobioside

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.85 Å

Oligo State

monomer

Ligands

1 x Z5L- MAN: alpha-D-mannopyranose-(1-2)-methyl 2-thio-alpha-D-mannopyranoside(Non-covalent)

Z5L-MAN.1: 17 residues within 4Å: Chain A: F.97, I.101, R.102, A.161, E.162, V.223, Y.224, D.226, L.287, R.340, P.341, E.342, Y.400, E.404, T.428, E.429 Ligands: CA.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:R.340, A:E.342, A:E.342, A:T.428, A:E.429, A:E.162, A:Y.224, A:A.225, A:D.226 Water bridges: A:R.102, A:T.428, A:Q.95, A:E.98, A:D.226, A:S.227, A:R.340

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: T.428 Ligands: Z5L-MAN.1 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.428, A:T.428, H2O.20, H2O.26, H2O.26 CA.3: 1 residues within 4Å: Chain A: E.230 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:E.230, H2O.20, H2O.20, H2O.21, H2O.21, H2O.24

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 6 residues within 4Å: Chain A: E.61, D.64, S.109, S.403, K.407, N.431 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.109, A:K.407, A:K.407 Water bridges: A:S.403

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thompson, A.J. et al., The Reaction Coordinate of a Bacterial Gh47 Alpha-Mannosidase: A Combined Quantum Mechanical and Structural Approach. Angew.Chem.Int.Ed.Engl. (2012)

Release Date

2013-01-30

Peptides

MANNOSYL-OLIGOSACCHARIDE 1,2-ALPHA-MANNOSIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MANNOSYL-OLIGOSACCHARIDE 1,2-ALPHA-MANNOSIDASE

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