SMTL ID : 5ne5.1

Crystal structure of family 47 alpha-1,2-mannosidase from Caulobacter K31 strain in complex with kifunensine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.05 Å

Oligo State

monomer

Ligands

1 x KIF: KIFUNENSINE(Non-covalent)

KIF.1: 12 residues within 4Å: Chain A: I.101, D.226, L.287, R.340, P.341, E.342, Y.400, E.404, T.428, E.429 Ligands: CA.2, BTB.4 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:D.226, A:R.340, A:E.342, A:E.404, A:T.428, A:E.429 Water bridges: A:R.102, A:R.102, A:R.340

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: T.428 Ligands: KIF.1 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.428, A:T.428, H2O.1, H2O.2, H2O.3 CA.3: 1 residues within 4Å: Chain A: E.230 5 PLIP interactions: 5 Ligand-Water interactions Metal complexes: H2O.1, H2O.1, H2O.1, H2O.4, H2O.7

1 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.4: 9 residues within 4Å: Chain A: Q.95, F.97, E.98, R.144, N.159, A.161, E.162, Y.224 Ligands: KIF.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.95, A:Q.95, A:Y.224 Water bridges: A:E.98, A:R.102, A:R.102, A:R.340 Salt bridges: A:E.162

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 5 residues within 4Å: Chain A: E.61, D.64, S.403, K.407, N.431 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.64, A:S.109, A:K.407 Water bridges: A:E.61, A:L.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Males, A. et al., Conformational Analysis of the Mannosidase Inhibitor Kifunensine: A Quantum Mechanical and Structural Approach. Chembiochem (2017)

Release Date

2017-03-29

Peptides

Mannosyl-oligosaccharide 1,2-alpha-mannosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mannosyl-oligosaccharide 1,2-alpha-mannosidase

Related Entries With Identical Sequence