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SMTL ID : 4baf.1

Hen egg-white lysozyme structure in complex with the europium tris- hydroxyethyltriazoledipicolinate complex at 1.51 A resolution.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.51 Å

Oligo State

monomer

Ligands

1 x EU3: EUROPIUM (III) ION(Non-functional Binders)

EU3.1:

3 residues within 4Å:

Ligands: IKX.2, IKX.3, IKX.4

No protein-ligand interaction detected (PLIP)

3 x IKX: 4-(4-(2-hydroxyethyl)-1H-1,2,3-triazol-1-yl)pyridine-2,6-dicarboxylic acid(Non-covalent)(Non-functional Binders)

IKX.2:	8 residues within 4Å: Chain A: R.5, K.33, F.38, A.122, W.123 Ligands: EU3.1, IKX.3, IKX.4 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.123, A:W.123 Water bridges: A:K.33 Salt bridges: A:K.33 pi-Stacking: A:W.123, A:W.123 pi-Cation interactions: A:R.5
IKX.3:	3 residues within 4Å: Ligands: EU3.1, IKX.2, IKX.4 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.33
IKX.4:	7 residues within 4Å: Chain A: G.4, R.5, E.7 Ligands: EU3.1, IKX.2, IKX.3, CL.10 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.7 Water bridges: A:R.5, A:R.5, A:R.5 Salt bridges: A:R.5, A:K.33

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.5:

9 residues within 4Å:

Chain A: L.56, Q.57, I.58, N.59, W.63, I.98, A.107, W.108
Ligands: CL.15

4 PLIP interactions:

4 interactions with chain A

Hydrophobic interactions: A:I.98, A:A.107
Hydrogen bonds: A:N.59, A:W.108

9 x CL: CHLORIDE ION(Non-functional Binders)

CL.6:	1 residues within 4Å: Chain A: Y.23 Ligand excluded by PLIP
CL.7:	5 residues within 4Å: Chain A: S.24, G.26, Q.121, I.124 Ligands: NA.13 Ligand excluded by PLIP
CL.8:	3 residues within 4Å: Chain A: N.65, P.79 Ligands: NA.12 Ligand excluded by PLIP
CL.9:	5 residues within 4Å: Chain A: N.65, G.67, R.68, T.69, S.72 Ligand excluded by PLIP
CL.10:	5 residues within 4Å: Chain A: G.4, R.5, C.6, E.7 Ligands: IKX.4 Ligand excluded by PLIP
CL.11:	1 residues within 4Å: Chain A: R.68 Ligand excluded by PLIP
CL.14:	2 residues within 4Å: Chain A: D.87, I.88 Ligand excluded by PLIP
CL.15:	3 residues within 4Å: Chain A: W.62, W.63 Ligands: ACT.5 Ligand excluded by PLIP
CL.16:	2 residues within 4Å: Chain A: R.73, N.74 Ligand excluded by PLIP

2 x NA: SODIUM ION(Non-functional Binders)

NA.12:	5 residues within 4Å: Chain A: N.74, N.77, I.78, P.79 Ligands: CL.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.74, A:I.78
NA.13:	3 residues within 4Å: Chain A: D.18, I.124 Ligands: CL.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.18

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Talon, R. et al., Clicked Europium Dipicolinate Complexes for Protein X-Ray Structure Determination. Chem.Commun.(Camb.) (2012)

Release Date

2012-11-14

Peptides

LYSOZYME C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

LYSOZYME C

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5kxs.1 | 5kxt.1 | 5kxw.1 | 5kxx.1 | 5kxy.1 | 5kxz.1 | 5ky1.1 | 5l3h.1 | 5l3i.1 | 5l9j.1 | 5la5.1 | 5la8.1 | 5laf.1 | 5lag.1 | 5lan.1 | 5lin.1 | 5lio.1 | 5lvg.1 | 5lvh.1 | 5lvi.1 | 5lvj.1 | 5lxw.1 | 5lym.1 | 5lym.2 | 5lyt.1 | 5lyz.1 | 5m1y.1 | 5m1y.2 | 5mjj.1 | 5myy.1 | 5nbj.1 | 5ne0.1 | 5nj1.1 | 5njm.1 | 5njp.1 | 5njq.1 | 5njr.1 | 5njs.1 | 5o4w.1 | 5o4w.2 | 5o4x.1 | 5o4x.2 | 5o6q.1 | 5ob6.1 | 5ob7.1 | 5ob8.1 | 5ob9.1 | 5ocv.1 | 5ocv.2 | 5oer.1 | 5ole.1 | 5oov.1 | 5ooy.1 | 5ooy.2 | 5op1.1 | 5t3f.1 | 5uvj.1 | 5v4g.1 | 5v4h.1 | 5v4i.1 | 5wr9.1 | 5wra.1 | 5wrb.1 | 5yin.1 | 5yky.1 | 6a10.1 | 6a10.2 | 6a10.3 | 6a4n.1 | 6a4o.1 | 6a4p.1 | 6a4q.1 | 6abn.1 | 6abz.1 | 6ac2.1 | 6ad5.1 | 6adf.1 | 6aea.1 | 6agn.1 | 6agr.1 | 6ahh.1 | 6ahl.1 | 6apm.1 | 6b7u.1 | 6b7v.1 | 6b7w.1 | 6bo1.1 | 6bo2.1 | 6bre.1 | 6ciw.1 | 6d6e.1 | 6d6f.1 | 6d6g.1 | 6d6h.1 | 6f1m.1 | 6f1o.1 | 6f1p.1 | 6f1r.1 | 6f2i.1 | 6f2j.1 | 6f2k.1 | 6fro.1 | 6frq.1 | 6fsj.1 | 6ftr.1 | 6g5c.1 | 6g5v.1 | 6g5y.1 | 6g8a.1 | 6gf0.1 | 6gnl.1 | 6gob.1 | 6goh.1 | 6goi.1 | 6goj.1 | 6h0k.1 | 6h0l.1 | 6h3b.1 | 6h79.1 | 6ht2.1 | 6ht2.2 | 6hu5.1 | 6hu5.2 | 6hy8.1 | 6ig6.1 | 6irj.1 | 6jb2.1 | 6jb5.1 | 6jb8.1 | 6jzi.1 | 6k5q.1 | 6k8g.1 | 6lav.1 | 6lt5.1 | 6lyt.1 | 6lyz.1 | 6mqv.1 | 6muz.1 | 6mx9.1 | 6o2h.1 | 6pbb.1 | 6pl9.1 | 6pla.1 | 6plb.1 | 6q88.1 | 6q8r.1 | 6q8t.1 | 6qea.1 | 6qnb.1 | 6qq3.1 | 6qqc.1 | 6qqd.1 | 6qqe.1 | 6qqf.1 | 6qww.1 | 6qwx.1 | 6qwy.1 | 6qwz.1 | 6qx0.1 | 6qxw.1 | 6qxx.1 | 6qxy.1 | 6qy0.1 | 6qy1.1 | 6qy2.1 | 6qy4.1 | 6qy5.1 | 6rnb.1 | 6rnc.1 | 6ro3.1 | 6ro5.1 | 6ro5.2 | 6rt1.1 | 6rt3.1 | 6rt9.1 | 6rta.1 | 6rxi.1 | 6s2n.1 | 6s7n.1 | 6set.1 | 6seu.1 | 6sew.1 | 6sex.1 | 6sez.1 | 6syc.1 | 6syc.2 | 6syd.1 | 6sye.1 | 6tvl.1 | 6tvy.1 | 6w7p.1 | 6w8e.1 | 6web.1 | 6wec.1 | 6wgo.1 | 6wrl.1 | 6wrm.1 | 6wx5.1 | 6ybf.1 | 6ybi.1 | 6yjx.1 | 6yob.1 | 6yoc.1 | 6yod.1 | 6yoe.1 | 6zs8.1 | 7a70.1 | 7ac2.1 | 7avf.1 | 7avg.1 | 7b9j.1 | 7baz.1 | 7bb1.1 | 7bcu.1 | 7bcx.1 | 7bd0.1 | 7bdm.1 | 7bdz.1 | 7be0.1 | 7be1.1 | 7be2.1 | 7beb.1 | 7bec.1 | 7bhk.1 | 7bhl.1 | 7bhm.1 | 7bhn.1 | 7bmo.1 | 7bmp.1 | 7bmq.1 | 7bmr.1 | 7bms.1 | 7bmt.1 | 7br5.1 | 7c09.1 | 7cdk.1 | 7cdm.1 | 7cdn.1 | 7cdo.1 | 7cdp.1 | 7cdq.1 | 7cdr.1 | 7cds.1 | 7cdt.1 | 7cdu.1 | 7cqo.1 | 7d0w.1 | 7deq.1 | 7der.1 | 7dln.1 | 7f26.1 | 7fcu.1 | 7fcw.1 | 7fg8.1 | 7fgu.1 | 7fgv.1 | 7jmu.1 | 7jmu.2 | 7kh5.1 | 7knk.1 | 7l84.1 | 7llp.1 | 7ln8.1 | 7ln9.1 | 7loq.1 | 7lor.1 | 7lp6.1 | 7lpl.1 | 7lpm.1 | 7lyz.1 | 7mrp.1 | 7njf.1 | 7nkf.1 | 7ol5.1 | 7ol6.1 | 7ol7.1 | 7ol8.1 | 7pnh.1 | 7q04.1 | 7q05.1 | 7q06.1 | 7q0t.1 | 7q0u.1 | 7q0v.1 | 7qnp.1 | 7qq1.1 | 7r1q.1 | 7rxy.1 | 7rxy.2 | 7ryd.1 | 7ryd.2 | 7ryk.1 | 7ryk.2 | 7rz0.1 | 7rz1.1 | 7rz2.1 | 7s27.1 | 7s28.1 | 7s29.1 | 7s2a.1 | 7s2b.1 | 7s2c.1 | 7s2d.1 | 7s2e.1 | 7s2f.1 | 7s2g.1 | 7s2q.1 | 7s2u.1 | 7s2v.1 | 7s2w.1 | 7s30.1 | 7s31.1 | 7s32.1 | 7s33.1 | 7s34.1 | 7s35.1 | 7s4w.1 | 7skw.1 | 7tum.1 | 7uly.1 | 7vei.1 | 7vgo.1 | 7vgp.1 | 7vgp.2 | 7wbd.1 | 7wbe.1 | 7wbf.1 | 7wkr.1 | 7wuc.1 | 7wxs.1 | 7z6j.1 | 7zu6.1 | 8a9d.1 | 8a9e.1 | 8a9r.1 | 8aaz.1 | 8aj3.1 | 8aj4.1 | 8aj5.1 | 8b3l.1 | 8b3t.1 | 8b3u.1 | 8b3v.1 | 8bov.1 | 8boy.1 | 8bph.1 | 8bpj.1 | 8bpu.1 | 8bqm.1 | 8bqp.1 | 8bqq.1 | 8bqr.1 | 8bqt.1 | 8c39.1 | 8cl5.1 | 8cl6.1 | 8cpc.1 | 8cvu.1 | 8cvv.1 | 8cvw.1 | 8cw0.1 | 8cw1.1 | 8cw3.1 | 8cw5.1 | 8cw6.1 | 8cw7.1 | 8cw8.1 | 8cwb.1 | 8cwc.1 | 8cwd.1 | 8cwe.1 | 8cwf.1 | 8cwg.1 | 8cwh.1 | 8d5s.1 | 8d5t.1 | 8d5u.1 | 8d5w.1 | 8d5x.1 | 8d5z.1 | 8d60.1 | 8d61.1 | 8d62.1 | 8d69.1 | 8d6b.1 | 8d6i.1 | 8d75.1 | 8d77.1 | 8d7a.1 | 8d7b.1 | 8d7c.1 | 8d7d.1 | 8d7j.1 | 8d7l.1 | 8d7q.1 | 8d7s.1 | 8d8a.1 | 8d8b.1 | 8d8c.1 | 8d8d.1 | 8d8e.1 | 8d8f.1 | 8d8g.1 | 8d8h.1 | 8dct.1 | 8dcu.1 | 8dcv.1 | 8dcw.1 | 8dyz.1 | 8dz7.1 | 8ezo.1 | 8ezp.1 | 8ezu.1 | 8ezx.1 | 8f00.1 | 8f0b.1 | 8f28.1 | 8f2g.1 | 8fp6.1 | 8fp7.1 | 8fp8.1 | 8fpb.1 | 8fpd.1 | 8fpm.1 | 8fpn.1 | 8fpp.1 | 8fpr.1 | 8fpu.1 | 8fry.1 | 8fs0.1 | 8fs9.1 | 8fsa.1 | 8fsc.1 | 8fsf.1 | 8fsg.1 | 8fsh.1 | 8fsm.1 | 8fsn.1 | 8fst.1 | 8fsu.1 | 8fsv.1 | 8fsw.1 | 8fsx.1 | 8fsy.1 | 8ft0.1 | 8ft1.1 | 8ft2.1 | 8ft3.1 | 8gmv.1 | 8gmw.1 | 8gq1.1 | 8h3w.1 | 8h8t.1 | 8h8u.1 | 8h8v.1 | 8h8w.1 | 8jqv.1 | 8k8m.1 | 8lyz.1 | 8om8.1 | 8oms.1 | 8omt.1 | 8p1a.1 | 8p1b.1 | 8p1c.1 | 8p1d.1 | 8pft.1 | 8pfu.1 | 8pfv.1 | 8pfw.1 | 8pfx.1 | 8pfy.1 | 8ph5.1 | 8ph6.1 | 8ph7.1 | 8ph8.1 | 8pte.1 | 8pyo.1 | 8pyp.1 | 8pyq.1 | 8qcu.1 | 8qv8.1 | 8reg.1 | 8rge.1 | 8rlf.1 | 8rlh.1 | 8rnv.1 | 8rnw.1 | 8rnx.1 | 8rny.1 | 8rpm.1 | 8rsh.1 | 8rt2.1 | 8rt3.1 | 8rus.1 | 8s2v.1 | 8scy.1 | 8sil.1 | 8w6k.1 | 8wdi.1 | 8wzf.1 | 8wzg.1 | 8wzr.1 | 8wzt.1 | 8wzv.1 | 8y1r.1 | 8y1s.1 | 8y9w.1 | 8ya1.1 | 8ya4.1 | 8ybg.1 | 8ybh.1 | 9b7c.1 | 9b7e.1 | 9b7f.1 | 9enz.1 | 9eo2.1 | 9ex0.1 | 9ex1.1 | 9ex2.1 | 9gcv.1 | 9ghx.1 | 9gog.1 | 9gok.1 | 9hc2.1 | 9kot.1 | 9lyz.1

Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

Swiss Institute of BioinformaticsSIB
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