SMTL ID : 4bi1.1

Scaffold Focused Virtual Screening: Prospective Application to the Discovery of TTK Inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

4 x 7PE: 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL(Non-functional Binders)

7PE.1: 13 residues within 4Å: Chain A: S.42, V.44, K.58, V.60, Y.73, E.76, I.77, M.105, M.107, I.168, D.169, A.173 Ligands: ZO6.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.42, A:S.42, A:K.58 7PE.2: 4 residues within 4Å: Chain A: W.127, K.130, S.131, K.134 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.134 7PE.5: 6 residues within 4Å: Chain A: K.34, I.36, Q.46, G.110, N.111 Ligands: ZO6.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.34, A:Q.46 7PE.8: 6 residues within 4Å: Chain A: D.271, K.274, C.275, K.278, Q.283 Ligands: EDO.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.278

1 x ZO6: thieno[3,2-c][2,6]naphthyridine(Non-covalent)

ZO6.3: 10 residues within 4Å: Chain A: I.36, V.44, A.56, I.91, E.108, C.109, G.110, L.159 Ligands: 7PE.1, 7PE.5 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.91, A:L.159 Hydrogen bonds: A:G.110

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 1 residues within 4Å: Chain A: D.71 No protein-ligand interaction detected (PLIP) EDO.6: 5 residues within 4Å: Chain A: H.141, H.144, P.218, I.287, P.288 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.144, A:I.287 EDO.7: 5 residues within 4Å: Chain A: F.261, K.274, L.277, K.278 Ligands: 7PE.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.274, A:K.278 EDO.9: 5 residues within 4Å: Chain A: Q.84, Q.85, H.86, D.88, R.92 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Langdon, S.R. et al., Scaffold-Focused Virtual Screening: Prospective Application to the Discovery of Ttk Inhibitors. J.Chem.Inf.Model (2013)

Release Date

2013-05-22

Peptides

DUAL SPECIFICITY PROTEIN KINASE TTK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DUAL SPECIFICITY PROTEIN KINASE TTK

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