SMTL ID : 5ap0.1

Naturally Occurring Mutations in the MPS1 Gene Predispose Cells to Kinase Inhibitor Drug Resistance.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x AU5: 9-CYCLOPENTYL-2-[[2-METHOXY-4-[(1-METHYLPIPERIDIN-4-YL)OXY]-PHENYL]AMINO]-7-METHYL-7,9-DIHYDRO-8H-PURIN-8-ONE(Non-covalent)

AU5.1: 16 residues within 4Å: Chain A: I.36, V.44, A.56, I.91, M.107, E.108, C.109, G.110, N.111, I.112, D.113, S.116, L.159, I.168 Ligands: P4C.2, DMS.4 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.36, A:I.36, A:V.44, A:L.159, A:I.168 Hydrogen bonds: A:G.110, A:G.110

2 x P4C: O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL(Non-covalent)

P4C.2: 15 residues within 4Å: Chain A: G.40, S.42, V.44, K.58, V.60, Y.73, E.76, I.77, M.105, M.107, I.168, D.169, A.173, N.174 Ligands: AU5.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.42, A:K.58 Water bridges: A:A.173 P4C.3: 8 residues within 4Å: Chain A: W.127, K.130, S.131, K.134, V.296, Q.297, I.298, Q.299 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.134

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 5 residues within 4Å: Chain A: Q.46, C.109, G.110, N.111 Ligands: AU5.1 No protein-ligand interaction detected (PLIP) DMS.5: 5 residues within 4Å: Chain A: Y.30, Y.55, Y.94, D.95, V.106 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.55 DMS.19: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:Y.59

13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 6 residues within 4Å: Chain A: H.141, H.144, P.218, I.287, P.288 Ligands: EDO.9 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.141 Water bridges: A:P.218, A:I.287 EDO.7: 3 residues within 4Å: Chain A: N.75, Y.79, G.147 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.75, A:N.75, A:G.147 EDO.8: 5 residues within 4Å: Chain A: I.54, Y.55, Y.94, E.108, C.109 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:C.109, A:C.109 Water bridges: A:Y.55, A:Y.55 EDO.9: 2 residues within 4Å: Chain A: P.288 Ligands: EDO.6 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.286 EDO.10: 4 residues within 4Å: Chain A: P.265, E.266, K.267, D.268 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.267, A:D.268 EDO.11: 3 residues within 4Å: Chain A: K.278, R.279, D.280 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.279, A:R.279, A:D.280 EDO.12: 3 residues within 4Å: Chain A: D.71, R.74 Ligands: EDO.13 No protein-ligand interaction detected (PLIP) EDO.13: 4 residues within 4Å: Chain A: N.67, D.71, R.74 Ligands: EDO.12 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.67, A:R.74 EDO.14: 4 residues within 4Å: Chain A: L.118, K.121, K.122, G.235 1 PLIP interactions: 1 interactions with chain A Water bridges: A:I.124 EDO.15: 4 residues within 4Å: Chain A: I.242, I.243, N.244, S.247 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.243, A:N.244, A:S.247, A:S.247 EDO.16: 3 residues within 4Å: Chain A: Y.79, K.82, H.146 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.79 Water bridges: A:G.147 EDO.17: 4 residues within 4Å: Chain A: E.138, H.141, T.142, Q.145 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.145 EDO.18: 4 residues within 4Å: Chain A: W.127, E.128, S.131, G.163 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.128, A:S.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gurden, M.D. et al., Naturally Occurring Mutations in the Mps1 Gene Predispose Cells to Kinase Inhibitor Drug Resistance. Cancer Res. (2015)

Release Date

2015-09-23

Peptides

DUAL SPECIFICITY PROTEIN KINASE TTK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DUAL SPECIFICITY PROTEIN KINASE TTK

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