- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x YB4: ~{N}-(2,6-diethylphenyl)-2-[[4-(4-methylpiperazin-1-yl)-2-(propanoylamino)phenyl]amino]-5,6-dihydropyrimido[4,5-e]indolizine-7-carboxamide(Covalent)
- 10 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 2 residues within 4Å:- Chain A: N.81, Y.96
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.81, A:N.81
GOL.3: 7 residues within 4Å:- Chain A: K.58, E.76, M.105, D.169, A.173, M.176
- Ligands: YB4.1
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.58, A:D.169, A:D.169
- Water bridges: A:K.58
GOL.4: 9 residues within 4Å:- Chain A: D.152, L.153, T.191, V.192, N.193, Y.194, M.195, S.224
- Chain B: Q.245
9 PLIP interactions:7 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:L.153, A:L.153, A:T.191, A:V.192, A:Y.194, A:S.224
- Water bridges: A:K.154, B:Q.245, B:Q.245
GOL.5: 5 residues within 4Å:- Chain A: I.54, Y.55, Y.94, E.108, C.109
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Y.55, A:C.109, A:C.109
- Water bridges: A:E.108, A:E.108
GOL.6: 5 residues within 4Å:- Chain A: R.28, Y.30, N.49, Y.55, D.95
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:N.49, A:Y.55, A:Y.55, A:D.95, A:D.95
- Water bridges: A:R.28
GOL.9: 2 residues within 4Å:- Chain B: N.81, Y.96
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.81, B:N.81
GOL.10: 7 residues within 4Å:- Chain B: K.58, E.76, M.105, D.169, A.173, M.176
- Ligands: YB4.8
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.58, B:D.169, B:D.169
- Water bridges: B:K.58
GOL.11: 9 residues within 4Å:- Chain A: Q.245
- Chain B: D.152, L.153, T.191, V.192, N.193, Y.194, M.195, S.224
9 PLIP interactions:2 interactions with chain A, 7 interactions with chain B- Water bridges: A:Q.245, A:Q.245, B:K.154
- Hydrogen bonds: B:L.153, B:L.153, B:T.191, B:V.192, B:Y.194, B:S.224
GOL.12: 5 residues within 4Å:- Chain B: I.54, Y.55, Y.94, E.108, C.109
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:Y.55, B:C.109, B:C.109
- Water bridges: B:E.108, B:E.108
GOL.13: 5 residues within 4Å:- Chain B: R.28, Y.30, N.49, Y.55, D.95
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:N.49, B:Y.55, B:Y.55, B:D.95, B:D.95
- Water bridges: B:R.28
- 2 x TOE: 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL(Non-covalent)
TOE.7: 12 residues within 4Å:- Chain A: S.38, G.39, H.150, D.152, K.154, N.157, D.169, G.171, A.173, N.174
- Chain B: N.244
- Ligands: YB4.1
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.38, A:D.152, A:N.157
TOE.14: 12 residues within 4Å:- Chain A: N.244
- Chain B: S.38, G.39, H.150, D.152, K.154, N.157, D.169, G.171, A.173, N.174
- Ligands: YB4.8
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.38, B:D.152, B:N.157
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- M Serafim, R.A. et al., Development of the First Covalent Monopolar Spindle Kinase 1 (MPS1/TTK) Inhibitor. J.Med.Chem. (2022)
- Release Date
- 2022-02-16
- Peptides
- Dual specificity protein kinase TTK or monopolar spindle 1 kinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x YB4: ~{N}-(2,6-diethylphenyl)-2-[[4-(4-methylpiperazin-1-yl)-2-(propanoylamino)phenyl]amino]-5,6-dihydropyrimido[4,5-e]indolizine-7-carboxamide(Covalent)
- 10 x GOL: GLYCEROL(Non-functional Binders)
- 2 x TOE: 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- M Serafim, R.A. et al., Development of the First Covalent Monopolar Spindle Kinase 1 (MPS1/TTK) Inhibitor. J.Med.Chem. (2022)
- Release Date
- 2022-02-16
- Peptides
- Dual specificity protein kinase TTK or monopolar spindle 1 kinase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A