SMTL ID : 4bpi.1

Mcl-1 bound to alpha beta Puma BH3 peptide 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

hetero-2-2-mer

Ligands

10 x CD: CADMIUM ION(Non-covalent)

CD.1: 1 residues within 4Å: Chain A: H.112 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.112, H2O.1 CD.2: 2 residues within 4Å: Chain A: C.121, E.123 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:C.121, H2O.1, H2O.1 CD.3: 3 residues within 4Å: Chain A: H.87 Chain B: E.3 Chain C: D.139 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain C Metal complexes: A:H.87, C:D.139, C:D.139 CD.4: 3 residues within 4Å: Chain A: D.71, I.72, H.112 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.71, A:I.72, A:H.112 CD.5: 1 residues within 4Å: Chain D: E.2 No protein-ligand interaction detected (PLIP) CD.6: 1 residues within 4Å: Chain C: H.112 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.112, H2O.1 CD.7: 2 residues within 4Å: Chain C: C.121, E.123 3 PLIP interactions: 1 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:C.121, H2O.2, H2O.2 CD.8: 3 residues within 4Å: Chain A: D.139 Chain C: H.87 Chain D: E.3 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain A Metal complexes: C:H.87, A:D.139, A:D.139 CD.9: 3 residues within 4Å: Chain C: D.71, I.72, H.112 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:D.71, C:I.72, C:H.112 CD.10: 1 residues within 4Å: Chain B: E.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, B.J. et al., Structure-Guided Rational Design of Alpha/Beta-Peptide Foldamers with High Affinity for Bcl-2 Family Prosurvival Proteins. Chembiochem (2013)

Release Date

2014-04-09

Peptides

FUSION PROTEIN CONSISTING OF INDUCED MYELOID LEUKEMIA CELL DIFFERENTIATION PROTEIN MCL-1 HOMOLOG: AC
ALPHA BETA BH3PEPTIDE: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

FUSION PROTEIN CONSISTING OF INDUCED MYELOID LEUKEMIA CELL DIFFERENTIATION PROTEIN MCL-1 HOMOLOG

ALPHA BETA BH3PEPTIDE

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