SMTL ID : 4c48.1

Crystal structure of AcrB-AcrZ complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-3-3-3-mer

Ligands

27 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)(Non-functional Binders)

LMT.1: 4 residues within 4Å: Chain A: M.1, F.4 Ligands: LMT.2, LMT.26 Ligand excluded by PLIP LMT.2: 3 residues within 4Å: Ligands: LMT.1, LMT.5, LMT.26 Ligand excluded by PLIP LMT.4: 3 residues within 4Å: Chain G: A.385 Ligands: LMT.8, LMT.19 Ligand excluded by PLIP LMT.5: 5 residues within 4Å: Chain D: M.1, N.3, Q.439 Ligands: LMT.2, LMT.26 Ligand excluded by PLIP LMT.6: 10 residues within 4Å: Chain D: R.8 Chain G: Q.439, G.440, L.891, E.947, K.950 Ligands: LMT.11, LMT.12, LMT.15, LMT.30 Ligand excluded by PLIP LMT.7: 1 residues within 4Å: Chain A: I.390 Ligand excluded by PLIP LMT.8: 1 residues within 4Å: Ligands: LMT.4 Ligand excluded by PLIP LMT.9: 2 residues within 4Å: Chain D: I.19 Ligands: LMT.24 Ligand excluded by PLIP LMT.10: 1 residues within 4Å: Ligands: LMT.16 Ligand excluded by PLIP LMT.11: 4 residues within 4Å: Chain D: M.1, F.4 Ligands: LMT.6, LMT.12 Ligand excluded by PLIP LMT.12: 3 residues within 4Å: Ligands: LMT.6, LMT.11, LMT.15 Ligand excluded by PLIP LMT.14: 3 residues within 4Å: Chain A: A.385 Ligands: LMT.18, LMT.29 Ligand excluded by PLIP LMT.15: 5 residues within 4Å: Chain G: M.1, N.3, Q.439 Ligands: LMT.6, LMT.12 Ligand excluded by PLIP LMT.16: 10 residues within 4Å: Chain A: Q.439, G.440, L.891, E.947, K.950 Chain G: R.8 Ligands: LMT.10, LMT.21, LMT.22, LMT.25 Ligand excluded by PLIP LMT.17: 1 residues within 4Å: Chain D: I.390 Ligand excluded by PLIP LMT.18: 1 residues within 4Å: Ligands: LMT.14 Ligand excluded by PLIP LMT.19: 2 residues within 4Å: Chain G: I.19 Ligands: LMT.4 Ligand excluded by PLIP LMT.20: 1 residues within 4Å: Ligands: LMT.26 Ligand excluded by PLIP LMT.21: 4 residues within 4Å: Chain G: M.1, F.4 Ligands: LMT.16, LMT.22 Ligand excluded by PLIP LMT.22: 3 residues within 4Å: Ligands: LMT.16, LMT.21, LMT.25 Ligand excluded by PLIP LMT.24: 3 residues within 4Å: Chain D: A.385 Ligands: LMT.9, LMT.28 Ligand excluded by PLIP LMT.25: 5 residues within 4Å: Chain A: M.1, N.3, Q.439 Ligands: LMT.16, LMT.22 Ligand excluded by PLIP LMT.26: 10 residues within 4Å: Chain A: R.8 Chain D: Q.439, G.440, L.891, E.947, K.950 Ligands: LMT.1, LMT.2, LMT.5, LMT.20 Ligand excluded by PLIP LMT.27: 1 residues within 4Å: Chain G: I.390 Ligand excluded by PLIP LMT.28: 1 residues within 4Å: Ligands: LMT.24 Ligand excluded by PLIP LMT.29: 2 residues within 4Å: Chain A: I.19 Ligands: LMT.14 Ligand excluded by PLIP LMT.30: 1 residues within 4Å: Ligands: LMT.6 Ligand excluded by PLIP

3 x NI: NICKEL (II) ION(Non-covalent)

NI.3: 2 residues within 4Å: Chain A: H.525, D.529 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.525, A:D.529, A:D.529 NI.13: 2 residues within 4Å: Chain D: H.525, D.529 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.525, D:D.529, D:D.529 NI.23: 2 residues within 4Å: Chain G: H.525, D.529 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:H.525, G:D.529, G:D.529

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Du, D. et al., Structure of the AcrAB-TolC multidrug efflux pump. Nature (2014)

Release Date

2014-04-30

Peptides

ACRIFLAVINE RESISTANCE PROTEIN B: ADG
DARPIN: BEH
UNCHARACTERIZED MEMBRANE PROTEIN YBHT: CFI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

G
A

B
B

E
B

H
B

C
C

F
C

I
C

Membrane

We predict this structure to be a membrane protein.
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ACRIFLAVINE RESISTANCE PROTEIN B

DARPIN

UNCHARACTERIZED MEMBRANE PROTEIN YBHT

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