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SMTL ID : 6zo7.1

3-Formylrifamycin SV binding to the access pocket of AcrB-G619P L and T protomer

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.85 Å
Oligo State
hetero-3-2-mer
Ligands
10 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
1 x D10: DECANE(Non-covalent)
8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
2 x 3YI: (2S,12Z,14E,16S,17S,18R,19R,20R,21S,22R,23S,24E)-8-formyl-5,6,9,17,19-pentahydroxy-23-methoxy-2,4,12,16,18,20,22-heptam ethyl-1,11-dioxo-1,2-dihydro-2,7-(epoxypentadeca[1,11,13]trienoimino)naphtho[2,1-b]furan-21-yl acetate(Non-covalent)
3 x GOL: GLYCEROL(Non-functional Binders)
1 x HEX: HEXANE(Non-covalent)
1 x SO4: SULFATE ION(Non-functional Binders)
2 x PTY: PHOSPHATIDYLETHANOLAMINE(Non-covalent)
2 x D12: DODECANE(Non-covalent)
1 x R16: HEXADECANE(Non-covalent)
1 x CL: CHLORIDE ION(Non-functional Binders)
1 x DDQ: DECYLAMINE-N,N-DIMETHYL-N-OXIDE(Non-covalent)
1 x NA: SODIUM ION(Non-functional Binders)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Tam, H.K. et al., Allosteric drug transport mechanism of multidrug transporter AcrB. Nat Commun (2021)
Release Date
2021-05-19
Peptides
Multidrug efflux pump subunit AcrB: ABC
DARPIN: DE
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D
E
E
Membrane
We predict this structure to be a membrane protein.

Multidrug efflux pump subunit AcrB

DARPIN

Related Entries With Identical Sequence

2j8s.1 | 4c48.1 | 4dx5.1 | 4dx6.1 | 4dx7.1 | 4u8v.1 | 4u8y.1 | 4u95.1 | 4u96.1 | 5en5.1 | 5eno.1 | 5enp.1 | 5enq.1 | 5enr.1 | 5ens.1 | 5ent.1 | 5jmn.1 | 5nc5.1 | 6q4n.1 | 6q4o.1 | 6q4p.1 | 6sgr.1 | 6sgs.1 | 6sgt.1 | 6sgu.1 | 6zo5.1 | 6zo6.1 | 6zo8.1 | 6zo9.1 | 6zoa.1  more...