SMTL ID : 4c8n.1

Binary complex of the large fragment of DNA polymerase I from Thermus Aquaticus with the aritificial base pair dNaM-d5SICS at the postinsertion site (sequence context 3)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: W.125, R.139, R.143 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.143 SO4.2: 4 residues within 4Å: Chain A: S.382, A.383, H.384, Y.394 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.383, A:H.384, A:Y.394, A:Y.394 SO4.3: 3 residues within 4Å: Chain A: R.101, Y.102, R.127 5 PLIP interactions: 5 interactions with chain A Water bridges: A:Y.102, A:R.127, A:R.127 Salt bridges: A:R.101, A:R.127 SO4.5: 4 residues within 4Å: Chain B: A.1, C.2, C.3 Chain C: T.11 No protein-ligand interaction detected (PLIP) SO4.6: 3 residues within 4Å: Chain B: C.5 Chain C: C.8, C.9 No protein-ligand interaction detected (PLIP)

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.4: 7 residues within 4Å: Chain A: Q.321, D.345, H.347, R.367, R.368, K.371, F.375 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.321, A:H.347, A:R.367, A:R.367, A:R.368, A:R.368, A:K.371

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Betz, K. et al., Structural Insights Into DNA Replication without Hydrogen Bonds. J.Am.Chem.Soc. (2013)

Release Date

2013-12-11

Peptides

LARGE FRAGMENT OF TAQ DNA POLYMERASE I: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

LARGE FRAGMENT OF TAQ DNA POLYMERASE I

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