SMTL ID : 4cls.1

Crystal structure of human soluble Adenylyl Cyclase with Pyrophosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-trimer

Ligands

3 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: D.47, I.48, D.99 Ligands: POP.3 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.47, A:D.99 MG.8: 4 residues within 4Å: Chain B: D.47, I.48, D.99 Ligands: POP.10 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.47, B:D.99 MG.15: 4 residues within 4Å: Chain C: D.47, I.48, D.99 Ligands: POP.17 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.47, C:D.99

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: K.95, L.166, V.167 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain B: K.95, L.166, V.167 Ligand excluded by PLIP CL.16: 3 residues within 4Å: Chain C: K.95, L.166, V.167 Ligand excluded by PLIP

3 x POP: PYROPHOSPHATE 2-(Non-covalent)

POP.3: 10 residues within 4Å: Chain A: D.47, I.48, S.49, G.50, F.51, T.52, D.99, K.144, N.412 Ligands: MG.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.50, A:F.51, A:T.52, A:D.99, A:N.412 Water bridges: A:A.53 Salt bridges: A:K.144 POP.10: 10 residues within 4Å: Chain B: D.47, I.48, S.49, G.50, F.51, T.52, D.99, K.144, N.412 Ligands: MG.8 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.50, B:F.51, B:T.52, B:D.99, B:N.412 Water bridges: B:A.53 Salt bridges: B:K.144 POP.17: 10 residues within 4Å: Chain C: D.47, I.48, S.49, G.50, F.51, T.52, D.99, K.144, N.412 Ligands: MG.15 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:G.50, C:F.51, C:T.52, C:D.99, C:N.412 Water bridges: C:A.53 Salt bridges: C:K.144

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: D.22, G.90, D.92, M.237, H.238, Y.239, Y.240 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.22, A:D.22, A:Y.239 GOL.11: 7 residues within 4Å: Chain B: D.22, G.90, D.92, M.237, H.238, Y.239, Y.240 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.22, B:D.22, B:Y.239 GOL.18: 7 residues within 4Å: Chain C: D.22, G.90, D.92, M.237, H.238, Y.239, Y.240 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:D.22, C:D.22, C:Y.239

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 6 residues within 4Å: Chain A: F.45, K.95, A.97, L.102, R.176, F.336 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.45, A:A.97 ACT.12: 6 residues within 4Å: Chain B: F.45, K.95, A.97, L.102, R.176, F.336 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.45, B:A.97 ACT.19: 6 residues within 4Å: Chain C: F.45, K.95, A.97, L.102, R.176, F.336 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:F.45, C:A.97

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 6 residues within 4Å: Chain A: F.29, S.30, P.31, R.33, S.264, K.267 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.33, A:R.33, A:K.267 Water bridges: A:S.163, A:S.264 EDO.7: 6 residues within 4Å: Chain A: K.95, H.164, I.332, N.333, K.334, V.335 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.95, A:H.164, A:V.335, A:V.335 EDO.13: 6 residues within 4Å: Chain B: F.29, S.30, P.31, R.33, S.264, K.267 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.33, B:R.33, B:K.267 Water bridges: B:S.163, B:S.264 EDO.14: 6 residues within 4Å: Chain B: K.95, H.164, I.332, N.333, K.334, V.335 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.95, B:H.164, B:V.335, B:V.335 EDO.20: 6 residues within 4Å: Chain C: F.29, S.30, P.31, R.33, S.264, K.267 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:R.33, C:R.33, C:K.267 Water bridges: C:S.163, C:S.264 EDO.21: 6 residues within 4Å: Chain C: K.95, H.164, I.332, N.333, K.334, V.335 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:K.95, C:H.164, C:V.335, C:V.335

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kleinboelting, S. et al., Crystal Structures of Human Soluble Adenylyl Cyclase Reveal Mechanisms of Catalysis and of its Activation Through Bicarbonate. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-03-05

Peptides

ADENYLATE CYCLASE TYPE 10: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

ADENYLATE CYCLASE TYPE 10

Related Entries With Identical Sequence