- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x APC: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER(Non-covalent)
- 3 x SO3: SULFITE ION(Non-covalent)
SO3.2: 8 residues within 4Å:- Chain A: K.95, L.102, F.165, L.166, V.167, V.335, F.336, M.337
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:V.167, A:M.337
SO3.11: 8 residues within 4Å:- Chain B: K.95, L.102, F.165, L.166, V.167, V.335, F.336, M.337
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:V.167, B:M.337
SO3.20: 8 residues within 4Å:- Chain C: K.95, L.102, F.165, L.166, V.167, V.335, F.336, M.337
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:V.167, C:M.337
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.3: 9 residues within 4Å:- Chain A: H.19, L.20, L.94, K.95, F.165, Y.268, R.401, E.403
- Ligands: EDO.4
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:L.94, A:R.401
- Water bridges: A:H.19
PEG.12: 9 residues within 4Å:- Chain B: H.19, L.20, L.94, K.95, F.165, Y.268, R.401, E.403
- Ligands: EDO.13
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:L.94, B:R.401
- Water bridges: B:H.19
PEG.21: 9 residues within 4Å:- Chain C: H.19, L.20, L.94, K.95, F.165, Y.268, R.401, E.403
- Ligands: EDO.22
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:L.94, C:R.401
- Water bridges: C:H.19
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 6 residues within 4Å:- Chain A: K.95, H.164, F.165, K.334, V.335
- Ligands: PEG.3
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:F.165, A:V.335
EDO.5: 4 residues within 4Å:- Chain A: F.442, K.443, E.444
- Ligands: GOL.9
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.444, A:E.444
EDO.6: 6 residues within 4Å:- Chain A: D.357, E.358, L.359, T.360, G.434, N.436
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:D.357, A:L.359, A:T.360, A:T.360, A:N.436
EDO.7: 5 residues within 4Å:- Chain A: T.322, K.326, G.330, Q.331, I.332
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:I.332
EDO.13: 6 residues within 4Å:- Chain B: K.95, H.164, F.165, K.334, V.335
- Ligands: PEG.12
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:F.165, B:V.335
EDO.14: 4 residues within 4Å:- Chain B: F.442, K.443, E.444
- Ligands: GOL.18
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.444, B:E.444
EDO.15: 6 residues within 4Å:- Chain B: D.357, E.358, L.359, T.360, G.434, N.436
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:D.357, B:L.359, B:T.360, B:T.360, B:N.436
EDO.16: 5 residues within 4Å:- Chain B: T.322, K.326, G.330, Q.331, I.332
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:I.332
EDO.22: 6 residues within 4Å:- Chain C: K.95, H.164, F.165, K.334, V.335
- Ligands: PEG.21
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:F.165, C:V.335
EDO.23: 4 residues within 4Å:- Chain C: F.442, K.443, E.444
- Ligands: GOL.27
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:E.444, C:E.444
EDO.24: 6 residues within 4Å:- Chain C: D.357, E.358, L.359, T.360, G.434, N.436
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:D.357, C:L.359, C:T.360, C:T.360, C:N.436
EDO.25: 5 residues within 4Å:- Chain C: T.322, K.326, G.330, Q.331, I.332
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:I.332
- 3 x CA: CALCIUM ION(Non-covalent)
CA.8: 4 residues within 4Å:- Chain A: D.47, I.48, D.99
- Ligands: APC.1
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.47, A:I.48, A:D.99, H2O.2
CA.17: 4 residues within 4Å:- Chain B: D.47, I.48, D.99
- Ligands: APC.10
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.47, B:I.48, B:D.99, H2O.7
CA.26: 4 residues within 4Å:- Chain C: D.47, I.48, D.99
- Ligands: APC.19
4 PLIP interactions:3 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.47, C:I.48, C:D.99, H2O.13
- 3 x GOL: GLYCEROL(Non-functional Binders)
GOL.9: 6 residues within 4Å:- Chain A: Y.432, A.439, F.442, E.444, Y.460
- Ligands: EDO.5
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:A.439, A:E.444
GOL.18: 6 residues within 4Å:- Chain B: Y.432, A.439, F.442, E.444, Y.460
- Ligands: EDO.14
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:A.439, B:E.444
GOL.27: 6 residues within 4Å:- Chain C: Y.432, A.439, F.442, E.444, Y.460
- Ligands: EDO.23
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:A.439, C:E.444
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kleinboelting, S. et al., Crystal Structures of Human Soluble Adenylyl Cyclase Reveal Mechanisms of Catalysis and of its Activation Through Bicarbonate. Proc.Natl.Acad.Sci.USA (2014)
- Release Date
- 2014-03-05
- Peptides
- ADENYLATE CYCLASE TYPE 10: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x APC: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER(Non-covalent)
- 3 x SO3: SULFITE ION(Non-covalent)
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 3 x CA: CALCIUM ION(Non-covalent)
- 3 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kleinboelting, S. et al., Crystal Structures of Human Soluble Adenylyl Cyclase Reveal Mechanisms of Catalysis and of its Activation Through Bicarbonate. Proc.Natl.Acad.Sci.USA (2014)
- Release Date
- 2014-03-05
- Peptides
- ADENYLATE CYCLASE TYPE 10: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A