SMTL ID : 4cly.1

Crystal structure of human soluble Adenylyl Cyclase soaked with biselenite

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-trimer

Ligands

3 x BSY: BISELENITE ION(Non-covalent)

BSY.1: 5 residues within 4Å: Chain A: K.95, L.102, L.166, V.167, M.337 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.167, A:M.337 Water bridges: A:M.337 BSY.7: 5 residues within 4Å: Chain B: K.95, L.102, L.166, V.167, M.337 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.167, B:M.337 Water bridges: B:M.337 BSY.13: 5 residues within 4Å: Chain C: K.95, L.102, L.166, V.167, M.337 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:V.167, C:M.337 Water bridges: C:M.337

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: A.439, F.442, K.443, E.444 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.439, A:E.444 Water bridges: A:E.444 EDO.3: 6 residues within 4Å: Chain A: T.52, G.98, I.407, G.408, Q.409, N.412 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.52, A:G.98, A:G.408, A:N.412 EDO.4: 6 residues within 4Å: Chain A: T.322, L.325, K.326, G.330, Q.331, I.332 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.332 EDO.8: 4 residues within 4Å: Chain B: A.439, F.442, K.443, E.444 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.439, B:E.444 Water bridges: B:E.444 EDO.9: 6 residues within 4Å: Chain B: T.52, G.98, I.407, G.408, Q.409, N.412 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.52, B:G.98, B:G.408, B:N.412 EDO.10: 6 residues within 4Å: Chain B: T.322, L.325, K.326, G.330, Q.331, I.332 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:I.332 EDO.14: 4 residues within 4Å: Chain C: A.439, F.442, K.443, E.444 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:A.439, C:E.444 Water bridges: C:E.444 EDO.15: 6 residues within 4Å: Chain C: T.52, G.98, I.407, G.408, Q.409, N.412 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:T.52, C:G.98, C:G.408, C:N.412 EDO.16: 6 residues within 4Å: Chain C: T.322, L.325, K.326, G.330, Q.331, I.332 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:I.332

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 7 residues within 4Å: Chain A: H.19, S.163, H.164, F.165, Y.268, K.334, E.403 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.165 Water bridges: A:H.19 PEG.11: 7 residues within 4Å: Chain B: H.19, S.163, H.164, F.165, Y.268, K.334, E.403 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:F.165 Water bridges: B:H.19 PEG.17: 7 residues within 4Å: Chain C: H.19, S.163, H.164, F.165, Y.268, K.334, E.403 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:F.165 Water bridges: C:H.19

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 9 residues within 4Å: Chain A: I.24, V.25, Y.26, G.27, H.28, F.29, L.261, S.264, L.265 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.25, A:H.28, A:S.264, A:S.264 GOL.12: 9 residues within 4Å: Chain B: I.24, V.25, Y.26, G.27, H.28, F.29, L.261, S.264, L.265 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:V.25, B:H.28, B:S.264, B:S.264 GOL.18: 9 residues within 4Å: Chain C: I.24, V.25, Y.26, G.27, H.28, F.29, L.261, S.264, L.265 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:V.25, C:H.28, C:S.264, C:S.264

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kleinboelting, S. et al., Crystal Structures of Human Soluble Adenylyl Cyclase Reveal Mechanisms of Catalysis and of its Activation Through Bicarbonate. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-03-05

Peptides

ADENYLATE CYCLASE TYPE 10: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

ADENYLATE CYCLASE TYPE 10

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