SMTL ID : 4d2e.2 (1 other biounit)

Crystal structure of an integral membrane kinase - v2.3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

homo-trimer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: S.70, L.73, D.116 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:S.70 Water bridges: A:D.116, C:S.69

2 x FLC: CITRATE ANION(Non-covalent)

FLC.2: 4 residues within 4Å: Chain A: E.37, E.85 Ligands: FLC.3, ZN.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.36 Water bridges: A:A.38 FLC.3: 8 residues within 4Å: Chain A: E.37, A.39, E.78, N.81, E.85 Ligands: FLC.2, ZN.5, 78N.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.81

1 x 78M: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE(Non-covalent)

78M.4: 4 residues within 4Å: Chain A: W.56, L.57, D.58, F.129 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.58

1 x ZN: ZINC ION(Non-covalent)

ZN.5: 4 residues within 4Å: Chain A: E.37, E.85 Ligands: FLC.2, FLC.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.37, A:E.37, A:E.85, A:E.85

3 x 78N: (2R)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE(Non-covalent)

78N.6: 5 residues within 4Å: Chain A: L.30, R.31, W.34, I.35, M.75 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.30, A:R.31, A:W.34, A:W.34, A:W.34, A:W.34 Hydrogen bonds: A:R.31, A:R.31 78N.7: 7 residues within 4Å: Chain A: A.39, Q.42, E.43, L.111, I.114, V.118 Ligands: FLC.3 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.114, A:I.114, A:V.118, A:V.118 Water bridges: A:L.111 78N.8: 8 residues within 4Å: Chain B: C.50, I.53, V.71, E.78, V.110, I.114, A.117, W.121 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:I.53, B:V.71, B:I.114, B:A.117, B:W.121, B:W.121, B:W.121 Hydrogen bonds: B:E.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boland, C. et al., Cell-Free Expression and in Meso Crystallisation of an Integral Membrane Kinase for Structure Determination. Cell.Mol.Life Sci. (2014)

Release Date

2014-07-23

Peptides

DIACYLGLYCEROL KINASE: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

Membrane

We predict this structure to be a membrane protein.
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DIACYLGLYCEROL KINASE

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