SMTL ID : 4d2m.1

Vaccinia Virus F1L bound to Bim BH3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-4-4-mer

Ligands

2 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.1: 14 residues within 4Å: Chain A: S.67, R.70, L.71, P.155, I.159, F.162 Chain C: S.67, R.70, L.71, P.155, I.159, F.162 Ligands: CL.3, CL.4 4 PLIP interactions: 1 interactions with chain C, 3 interactions with chain A Hydrophobic interactions: C:L.71, A:L.71, A:I.159 Hydrogen bonds: A:S.67 MRD.6: 14 residues within 4Å: Chain E: S.67, R.70, L.71, P.155, I.159, F.162 Chain G: S.67, R.70, L.71, P.155, I.159, F.162 Ligands: CL.8, CL.9 4 PLIP interactions: 1 interactions with chain G, 3 interactions with chain E Hydrophobic interactions: G:L.71, E:L.71, E:I.159 Hydrogen bonds: E:S.67

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 7 residues within 4Å: Chain A: V.156, K.157, K.160 Chain E: V.156, K.157, K.160 Ligands: CL.7 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain A: R.70, L.74 Chain C: P.155 Ligands: MRD.1 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain A: S.67, P.155 Chain C: R.70, L.74 Ligands: MRD.1 Ligand excluded by PLIP CL.5: 5 residues within 4Å: Chain C: K.157, K.160 Chain G: K.157, K.160 Ligands: CL.10 Ligand excluded by PLIP CL.7: 7 residues within 4Å: Chain A: V.156, K.157, K.160 Chain E: V.156, K.157, K.160 Ligands: CL.2 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain E: R.70, L.74 Chain G: P.155 Ligands: MRD.6 Ligand excluded by PLIP CL.9: 5 residues within 4Å: Chain E: S.67, P.155 Chain G: R.70, L.74 Ligands: MRD.6 Ligand excluded by PLIP CL.10: 5 residues within 4Å: Chain C: K.157, K.160 Chain G: K.157, K.160 Ligands: CL.5 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Campbell, S. et al., Structural Insight Into Bh3-Domain Binding of Vaccinia Virus Anti-Apoptotic F1L. J.Virol. (2014)

Release Date

2014-06-04

Peptides

PROTEIN F1: ACEG
BCL-2-LIKE PROTEIN 11: BDFH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
A

G
C

B
B

D
D

F
B

H
D

PROTEIN F1

BCL-2-LIKE PROTEIN 11

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