SMTL ID : 4d4z.2 (1 other biounit)

STRUCTURE OF HUMAN DEOXYHYPUSINE HYDROXYLASE in complex with glycerol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

2 x FE: FE (III) ION(Non-covalent)

FE.1: 6 residues within 4Å: Chain A: H.94, E.95, H.212 Ligands: FE.2, OH.3, GOL.4 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.94, A:E.95, A:H.212, OH.3 FE.2: 6 residues within 4Å: Chain A: H.61, H.245, E.246 Ligands: FE.1, OH.3, GOL.4 5 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions, 1 Ligand-Ligand interactions Metal complexes: A:H.61, A:H.245, A:E.246, H2O.1, OH.3

1 x OH: HYDROXIDE ION(Non-covalent)

OH.3: 10 residues within 4Å: Chain A: H.61, H.94, E.95, H.212, M.242, H.245, E.246 Ligands: FE.1, FE.2, GOL.4 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 13 residues within 4Å: Chain A: H.61, Y.65, H.94, E.95, E.98, P.154, H.212, E.213, Y.216, E.246 Ligands: FE.1, FE.2, OH.3 2 PLIP interactions: 2 interactions with chain A Water bridges: A:V.152, A:Y.216

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Han, Z. et al., Crystal Structure of the Peroxo-Diiron(III) Intermediate of Deoxyhypusine Hydroxylase, an Oxygenase Involved in Hypusination. Structure (2015)

Release Date

2015-04-15

Peptides

DEOXYHYPUSINE HYDROXYLASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DEOXYHYPUSINE HYDROXYLASE

Related Entries With Identical Sequence