SMTL ID : 4d85.1

Crystal Structure of Human Beta Secretase in Complex with NVP-BVI151

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

monomer

Ligands

1 x 0GU: (3R,4S,5S)-3-[(3-TERT-BUTYLBENZYL)AMINO]-5-[(4,4,7'-TRIFLUORO-1',2'-DIHYDROSPIRO[CYCLOHEXANE-1,3'-INDOL]-5'-YL)METHYL]TETRAHYDRO-2H-THIOPYRAN-4-OL 1,1-DIOXIDE(Non-covalent)

0GU.1: 25 residues within 4Å: Chain A: G.27, Q.28, G.29, L.46, D.48, G.50, S.51, V.85, P.86, Y.87, T.88, Q.89, G.90, K.123, F.124, I.126, W.131, I.142, R.144, Y.214, D.244, G.246, T.247, T.248, R.251 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.46, A:V.85, A:Y.87, A:Y.87, A:Y.87, A:Q.89, A:I.126, A:W.131, A:I.142, A:Y.214 Hydrogen bonds: A:D.48, A:F.124, A:D.244 pi-Stacking: A:Y.87 Halogen bonds: A:G.27

1 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 3 residues within 4Å: Chain A: T.119, E.120, S.121 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rueeger, H. et al., Discovery of cyclic sulfone hydroxyethylamines as potent and selective beta-site APP-cleaving enzyme 1 (BACE1) inhibitors: structure based design and in vivo reduction of amyloid beta-peptides. J.Med.Chem. (2012)

Release Date

2012-11-21

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-secretase 1

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