- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x GA2: 9-(1,3-DIHYDROXY-PROPOXYMETHANE)GUANINE(Non-covalent)
- 6 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.2: 5 residues within 4Å:- Chain A: V.138, A.139, F.140, G.141
- Chain D: D.183
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain D- Water bridges: A:G.141
- Salt bridges: D:D.183
DMS.10: 5 residues within 4Å:- Chain B: V.138, A.139, F.140, G.141
- Chain F: D.183
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain F- Water bridges: B:G.141
- Salt bridges: F:D.183
DMS.18: 5 residues within 4Å:- Chain C: V.138, A.139, F.140, G.141
- Chain E: D.183
2 PLIP interactions:1 interactions with chain E, 1 interactions with chain C- Salt bridges: E:D.183
- Water bridges: C:G.141
DMS.26: 5 residues within 4Å:- Chain A: D.183
- Chain D: V.138, A.139, F.140, G.141
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain A- Water bridges: D:G.141
- Salt bridges: A:D.183
DMS.34: 5 residues within 4Å:- Chain C: D.183
- Chain E: V.138, A.139, F.140, G.141
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain E- Salt bridges: C:D.183
- Water bridges: E:G.141
DMS.42: 5 residues within 4Å:- Chain B: D.183
- Chain F: V.138, A.139, F.140, G.141
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain F- Salt bridges: B:D.183
- Water bridges: F:G.141
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 6 residues within 4Å:- Chain A: G.30, Q.31, N.55, E.57, T.69, K.76
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:G.30, A:Q.31, A:Q.31, A:N.55, A:T.69, A:K.76
GOL.11: 6 residues within 4Å:- Chain B: G.30, Q.31, N.55, E.57, T.69, K.76
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:G.30, B:Q.31, B:Q.31, B:N.55, B:T.69, B:K.76
GOL.19: 6 residues within 4Å:- Chain C: G.30, Q.31, N.55, E.57, T.69, K.76
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:G.30, C:Q.31, C:Q.31, C:N.55, C:T.69, C:K.76
GOL.27: 6 residues within 4Å:- Chain D: G.30, Q.31, N.55, E.57, T.69, K.76
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:G.30, D:Q.31, D:Q.31, D:N.55, D:K.76
GOL.35: 6 residues within 4Å:- Chain E: G.30, Q.31, N.55, E.57, T.69, K.76
5 PLIP interactions:5 interactions with chain E- Hydrogen bonds: E:G.30, E:Q.31, E:Q.31, E:N.55, E:K.76
GOL.43: 6 residues within 4Å:- Chain F: G.30, Q.31, N.55, E.57, T.69, K.76
5 PLIP interactions:5 interactions with chain F- Hydrogen bonds: F:G.30, F:Q.31, F:Q.31, F:N.55, F:K.76
- 30 x CL: CHLORIDE ION(Non-functional Binders)
CL.4: 4 residues within 4Å:- Chain A: R.107, G.109, S.110
- Ligands: GA2.1
Ligand excluded by PLIPCL.5: 3 residues within 4Å:- Chain A: F.174, N.181, S.184
Ligand excluded by PLIPCL.6: 2 residues within 4Å:- Chain A: K.75, K.76
Ligand excluded by PLIPCL.7: 4 residues within 4Å:- Chain A: G.26, N.60, E.61, V.62
Ligand excluded by PLIPCL.8: 3 residues within 4Å:- Chain A: Q.185, E.187, K.188
Ligand excluded by PLIPCL.12: 4 residues within 4Å:- Chain B: R.107, G.109, S.110
- Ligands: GA2.9
Ligand excluded by PLIPCL.13: 3 residues within 4Å:- Chain B: F.174, N.181, S.184
Ligand excluded by PLIPCL.14: 2 residues within 4Å:- Chain B: K.75, K.76
Ligand excluded by PLIPCL.15: 4 residues within 4Å:- Chain B: G.26, N.60, E.61, V.62
Ligand excluded by PLIPCL.16: 3 residues within 4Å:- Chain B: Q.185, E.187, K.188
Ligand excluded by PLIPCL.20: 4 residues within 4Å:- Chain C: R.107, G.109, S.110
- Ligands: GA2.17
Ligand excluded by PLIPCL.21: 3 residues within 4Å:- Chain C: F.174, N.181, S.184
Ligand excluded by PLIPCL.22: 2 residues within 4Å:- Chain C: K.75, K.76
Ligand excluded by PLIPCL.23: 4 residues within 4Å:- Chain C: G.26, N.60, E.61, V.62
Ligand excluded by PLIPCL.24: 3 residues within 4Å:- Chain C: Q.185, E.187, K.188
Ligand excluded by PLIPCL.28: 4 residues within 4Å:- Chain D: R.107, G.109, S.110
- Ligands: GA2.25
Ligand excluded by PLIPCL.29: 3 residues within 4Å:- Chain D: F.174, N.181, S.184
Ligand excluded by PLIPCL.30: 2 residues within 4Å:- Chain D: K.75, K.76
Ligand excluded by PLIPCL.31: 4 residues within 4Å:- Chain D: G.26, N.60, E.61, V.62
Ligand excluded by PLIPCL.32: 3 residues within 4Å:- Chain D: Q.185, E.187, K.188
Ligand excluded by PLIPCL.36: 4 residues within 4Å:- Chain E: R.107, G.109, S.110
- Ligands: GA2.33
Ligand excluded by PLIPCL.37: 3 residues within 4Å:- Chain E: F.174, N.181, S.184
Ligand excluded by PLIPCL.38: 2 residues within 4Å:- Chain E: K.75, K.76
Ligand excluded by PLIPCL.39: 4 residues within 4Å:- Chain E: G.26, N.60, E.61, V.62
Ligand excluded by PLIPCL.40: 3 residues within 4Å:- Chain E: Q.185, E.187, K.188
Ligand excluded by PLIPCL.44: 4 residues within 4Å:- Chain F: R.107, G.109, S.110
- Ligands: GA2.41
Ligand excluded by PLIPCL.45: 3 residues within 4Å:- Chain F: F.174, N.181, S.184
Ligand excluded by PLIPCL.46: 2 residues within 4Å:- Chain F: K.75, K.76
Ligand excluded by PLIPCL.47: 4 residues within 4Å:- Chain F: G.26, N.60, E.61, V.62
Ligand excluded by PLIPCL.48: 3 residues within 4Å:- Chain F: Q.185, E.187, K.188
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- de Giuseppe, P.O. et al., Insights into phosphate cooperativity and influence of substrate modifications on binding and catalysis of hexameric purine nucleoside phosphorylases. Plos One (2012)
- Release Date
- 2012-09-26
- Peptides
- Purine nucleoside phosphorylase deoD-type: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x GA2: 9-(1,3-DIHYDROXY-PROPOXYMETHANE)GUANINE(Non-covalent)
- 6 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 30 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- de Giuseppe, P.O. et al., Insights into phosphate cooperativity and influence of substrate modifications on binding and catalysis of hexameric purine nucleoside phosphorylases. Plos One (2012)
- Release Date
- 2012-09-26
- Peptides
- Purine nucleoside phosphorylase deoD-type: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A