SMTL ID : 4dgv.1

Structure of the Hepatitis C virus envelope glycoprotein E2 antigenic region 412-423 bound to the broadly neutralizing antibody HCV1, P2(1) form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: T.120, S.122, F.156, L.180, Y.186 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.186 Water bridges: A:T.91, A:T.91, A:S.122, A:S.122, A:G.184

1 x K: POTASSIUM ION(Non-covalent)

K.2: 3 residues within 4Å: Chain A: Y.59, Y.60, R.65 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kong, L. et al., Structural basis of hepatitis C virus neutralization by broadly neutralizing antibody HCV1. Proc.Natl.Acad.Sci.USA (2012)

Release Date

2012-05-23

Peptides

HCV1 Heavy Chain: A
HCV1 Light Chain: B
E2 peptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
A

HCV1 Heavy Chain

HCV1 Light Chain

E2 peptide

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