SMTL ID : 5kzp.2 (3 other biounits)

Structure of the HCV1-C1 Antibody-Antigen Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 4 residues within 4Å: Chain A: S.101, L.102, V.103, R.104 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.103 Hydrogen bonds: A:V.103, A:R.104

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: D.105 Chain B: D.50 5 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: A:D.105, B:D.50, H2O.1, H2O.2, H2O.4 CA.3: 2 residues within 4Å: Chain B: N.53, R.54 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:R.54, H2O.4, H2O.4, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pierce, B.G. et al., Structure-Based Design of Hepatitis C Virus Vaccines That Elicit Neutralizing Antibody Responses to a Conserved Epitope. J. Virol. (2017)

Release Date

2017-07-05

Peptides

HCV1-C1 Antibody Fab Heavy Chain: A
HCV1-C1 Antibody Fab Light Chain: B
C1 Epitope: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
I

C
B

HCV1-C1 Antibody Fab Heavy Chain

HCV1-C1 Antibody Fab Light Chain

C1 Epitope

Related Entries With Identical Sequence