SMTL ID : 4djq.1

Crystal Structure of wild-type HIV-1 Protease in Complex with MKP86

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

1 x M86: 2-(2-oxoimidazolidin-1-yl)ethyl [(2S,3R)-3-hydroxy-4-{[(4-methoxyphenyl)sulfonyl][(2S)-2-methylbutyl]amino}-1-phenylbutan-2-yl]carbamate(Non-covalent)

M86.1: 22 residues within 4Å: Chain A: L.23, D.25, G.27, A.28, D.29, G.48, G.49, I.50, P.81 Chain B: R.8, D.25, G.27, A.28, D.29, D.30, V.32, G.48, G.49, I.50, P.81, V.82, I.84 20 PLIP interactions: 10 interactions with chain A, 10 interactions with chain B Hydrophobic interactions: A:L.23, A:P.81, B:A.28, B:V.32, B:P.81, B:V.82 Hydrogen bonds: A:D.25, A:G.27, A:G.27, A:D.29, B:R.8, B:D.29, B:D.30 Water bridges: A:D.29, A:D.29, A:I.50, B:R.8, B:I.50 Salt bridges: A:D.25, B:D.25

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 1 residues within 4Å: Chain B: P.1 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:P.1, B:P.1, B:P.1 Water bridges: A:F.99 PO4.3: 1 residues within 4Å: Chain B: G.16 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.14 Water bridges: B:G.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parai, M.K. et al., Design, synthesis, and biological and structural evaluations of novel HIV-1 protease inhibitors to combat drug resistance. J.Med.Chem. (2012)

Release Date

2012-08-01

Peptides

Pol polyprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pol polyprotein

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