SMTL ID : 4djr.1

Crystal Structure of wild-type HIV-1 Protease in Complex with MKP97

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-dimer

Ligands

1 x 0KJ: [(2S)-5-oxopyrrolidin-2-yl]methyl [(2S,3R)-4-{(1,3-benzothiazol-6-ylsulfonyl)[(2S)-2-methylbutyl]amino}-3-hydroxy-1-phenylbutan-2-yl]carbamate(Non-covalent)

0KJ.1: 22 residues within 4Å: Chain A: D.25, G.27, A.28, D.29, G.48, G.49, I.50, V.82 Chain B: L.23, D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50, P.81, V.82, I.84 19 PLIP interactions: 8 interactions with chain A, 11 interactions with chain B Hydrophobic interactions: A:V.82, B:L.23, B:A.28, B:V.32, B:P.81, B:V.82, B:I.84 Hydrogen bonds: A:G.27, A:G.27, A:G.27, A:D.29, B:D.29, B:D.30 Water bridges: A:D.30, A:D.30, B:I.50, B:I.50 Salt bridges: A:D.25, B:D.25

3 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 2 residues within 4Å: Chain A: M.36, N.37 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.37, A:N.37, A:N.37 PO4.3: 1 residues within 4Å: Chain B: P.1 No protein-ligand interaction detected (PLIP) PO4.4: 2 residues within 4Å: Chain B: G.16, G.17 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.17 Water bridges: B:G.16, B:G.16, B:G.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parai, M.K. et al., Design, synthesis, and biological and structural evaluations of novel HIV-1 protease inhibitors to combat drug resistance. J.Med.Chem. (2012)

Release Date

2012-08-01

Peptides

Pol polyprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pol polyprotein

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