SMTL ID : 4dog.1

Structures of Vaccinia Virus Uracil-DNA Glycosylase in New Crystal Forms

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: G.162, K.163, T.164, G.182, Y.183, H.184 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.163, A:T.164, A:H.184 SO4.3: 6 residues within 4Å: Chain B: G.162, K.163, T.164, G.182, Y.183, H.184 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.163, B:T.164, B:H.184

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: G.69, D.71, P.72, Y.73, F.82, S.91, N.123 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.71 Water bridges: A:Y.73 EDO.4: 7 residues within 4Å: Chain B: G.69, D.71, P.72, Y.73, F.82, S.91, N.123 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.71 Water bridges: B:Y.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schormann, N. et al., Analysis of the Dimer Interface in Crystal Structures of Vaccinia Virus Uracil DNA Glycosylase. To be Published

Release Date

2013-02-20

Peptides

Uracil-DNA glycosylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Uracil-DNA glycosylase

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