SMTL ID : 5jx3.4 (3 other biounits)

Wild type D4 in orthorhombic space group

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: G.69, D.71, P.72, Y.73, P.81, F.82, S.91, N.123 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.73, A:F.82, A:S.91, A:S.91, A:N.123 Water bridges: A:I.70 GOL.3: 8 residues within 4Å: Chain B: G.69, I.70, D.71, P.72, Y.73, F.82, S.91, N.123 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.71, B:Y.73, B:F.82, B:N.123, B:N.123

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: K.163, H.184 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain B: K.163, Y.183, H.184 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schormann, N. et al., Poxvirus uracil-DNA glycosylase-An unusual member of the family I uracil-DNA glycosylases. Protein Sci. (2016)

Release Date

2016-06-29

Peptides

Uracil-DNA glycosylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

Uracil-DNA glycosylase

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