SMTL ID : 5jx3.2 (3 other biounits)

Wild type D4 in orthorhombic space group

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: G.69, I.70, D.71, P.72, Y.73, P.81, F.82, S.91, N.123 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.71, A:F.82, A:S.91, A:N.123 Water bridges: A:I.70, A:Y.73 GOL.2: 7 residues within 4Å: Chain B: E.35, V.36, Y.139, W.140, D.141, K.142, I.143 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.141, B:D.141, B:K.142, B:I.143 GOL.3: 9 residues within 4Å: Chain B: G.69, D.71, P.72, Y.73, P.81, F.82, S.91, N.123, H.184 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:F.82, B:S.91, B:S.91, B:N.123 Water bridges: B:I.70, B:D.71, B:Y.73 GOL.4: 5 residues within 4Å: Chain B: Y.73, P.74, K.89, K.90, S.91 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.90, B:S.91

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 2 residues within 4Å: Chain B: P.85, N.86 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schormann, N. et al., Poxvirus uracil-DNA glycosylase-An unusual member of the family I uracil-DNA glycosylases. Protein Sci. (2016)

Release Date

2016-06-29

Peptides

Uracil-DNA glycosylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Uracil-DNA glycosylase

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