SMTL ID : 4dpt.2 (1 other biounit)

Crystal structure of Staphylococcus epidermidis mevalonate diphosphate decarboxylase complexed with inhibitor 6-FMVAPP and ATPgS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

monomer

Ligands

1 x FM0: (3R)-3-(fluoromethyl)-3-hydroxy-5-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}pentanoic acid(Non-covalent)

FM0.1: 17 residues within 4Å: Chain A: A.19, Y.23, W.24, K.26, I.32, S.112, S.144, G.145, S.146, R.149, S.197, R.198, M.201, M.248, D.288, A.289 Ligands: AGS.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.24 Hydrogen bonds: A:Y.23, A:Y.23, A:Y.23, A:S.112, A:G.145, A:S.146, A:S.146, A:S.197, A:D.288 Salt bridges: A:K.26, A:R.149, A:R.198

1 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.2: 19 residues within 4Å: Chain A: T.48, L.63, L.65, E.74, S.99, N.101, A.106, G.108, L.109, A.110, S.111, S.112, A.113, A.115, S.144, S.146, S.196, S.197 Ligands: FM0.1 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:E.74, A:S.99, A:N.101, A:N.101, A:A.106, A:G.108, A:L.109, A:A.110, A:S.111, A:S.112, A:S.112, A:A.113, A:S.144, A:S.146, A:S.146, A:S.146, A:S.197, A:S.197, A:S.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barta, M.L. et al., Structural basis for nucleotide binding and reaction catalysis in mevalonate diphosphate decarboxylase. Biochemistry (2012)

Release Date

2012-07-11

Peptides

Mevalonate diphosphate decarboxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Mevalonate diphosphate decarboxylase

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