SMTL ID : 4du7.2 (1 other biounit)

Crystal structure of Staphylococcus epidermidis mevalonate diphosphate decarboxylase complexed with substrate mevalonate diphosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x DP6: (3R)-3-HYDROXY-5-{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}-3-METHYLPENTANOIC ACID(Non-covalent)

DP6.1: 15 residues within 4Å: Chain A: A.19, Y.23, W.24, K.26, I.32, S.112, S.144, G.145, S.146, R.149, S.197, R.198, M.201, D.288, A.289 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:D.288 Hydrogen bonds: A:Y.23, A:Y.23, A:Y.23, A:S.112, A:S.144, A:G.145, A:S.146, A:S.146, A:S.197, A:D.288 Water bridges: A:A.19 Salt bridges: A:K.26, A:R.149, A:R.198

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 2 residues within 4Å: Chain A: P.104, T.105 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Barta, M.L. et al., Structural basis for nucleotide binding and reaction catalysis in mevalonate diphosphate decarboxylase. Biochemistry (2012)

Release Date

2012-07-11

Peptides

Mevalonate diphosphate decarboxylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Mevalonate diphosphate decarboxylase

Related Entries With Identical Sequence