SMTL ID : 4drj.1

o-crystal structure of the PPIase domain of FKBP52, Rapamycin and the FRB fragment of mTOR

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x RAP: RAPAMYCIN IMMUNOSUPPRESSANT DRUG(Non-covalent)

RAP.1: 22 residues within 4Å: Chain A: Y.61, F.71, D.72, F.81, G.88, E.89, V.90, I.91, W.94, Y.117, K.125, I.126, F.134 Chain B: L.15, E.16, S.19, F.23, T.82, W.85, D.86, Y.89, F.92 25 PLIP interactions: 12 interactions with chain B, 13 interactions with chain A Hydrophobic interactions: B:L.15, B:F.23, B:F.23, B:F.23, B:F.23, B:F.23, B:W.85, B:Y.89, B:Y.89, B:Y.89, B:F.92, B:F.92, A:Y.61, A:F.81, A:V.90, A:W.94, A:W.94, A:Y.117, A:I.126 Hydrogen bonds: A:D.72, A:D.72, A:I.91, A:Y.117, A:K.125 Water bridges: A:G.88

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: R.56, F.58, S.82 Chain B: R.93, K.97 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.82 Water bridges: A:R.56, A:R.56 Salt bridges: A:R.56, B:R.93, B:K.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marz, A.M. et al., Large FK506-Binding Proteins Shape the Pharmacology of Rapamycin. Mol.Cell.Biol. (2013)

Release Date

2013-02-06

Peptides

Peptidyl-prolyl cis-trans isomerase FKBP4: A
Serine/threonine-protein kinase mTOR: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peptidyl-prolyl cis-trans isomerase FKBP4

Serine/threonine-protein kinase mTOR

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