SMTL ID : 4dtk.1

Novel and selective pan-PIM kinase inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

monomer

Ligands

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: R.107, A.109, L.110, Q.111, L.114 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.107, A:R.107, A:Q.111 EDO.2: 2 residues within 4Å: Chain A: D.79, W.80 1 PLIP interactions: 1 interactions with chain A Water bridges: A:W.80 EDO.3: 3 residues within 4Å: Chain A: E.112, R.229, S.231 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.229, A:R.229, A:S.231 EDO.4: 2 residues within 4Å: Chain A: S.232, Q.235 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.232, A:R.239 EDO.5: 7 residues within 4Å: Chain A: F.101, I.104, T.105, D.141, D.205, G.209, D.210 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.101, A:D.210, A:D.210 EDO.6: 3 residues within 4Å: Chain A: E.112, E.113, R.116 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.113, A:R.116, A:R.116 Water bridges: A:E.112 EDO.7: 4 residues within 4Å: Chain A: W.240, S.247, D.248, R.249 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.249, A:E.254

1 x 7LI: (5Z)-5-{2-[(3R)-3-aminopiperidin-1-yl]-3-(propan-2-yloxy)benzylidene}-1,3-thiazolidine-2,4-dione(Non-covalent)

7LI.8: 15 residues within 4Å: Chain A: L.15, G.16, F.20, V.23, A.36, K.38, I.75, L.91, E.92, V.97, D.99, E.142, L.145, I.156, D.157 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.15, A:F.20, A:V.23, A:A.36, A:L.145, A:L.145, A:I.156 Hydrogen bonds: A:K.38, A:D.99, A:E.142, A:D.157 Water bridges: A:K.38, A:F.158

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.9: 4 residues within 4Å: Chain A: R.127, N.131, F.252, E.253 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.253 Water bridges: A:R.127, A:R.127, A:F.252, A:F.252 Salt bridges: A:R.127 SO4.10: 1 residues within 4Å: Chain A: R.150 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dakin, L.A. et al., Discovery of novel benzylidene-1,3-thiazolidine-2,4-diones as potent and selective inhibitors of the PIM-1, PIM-2, and PIM-3 protein kinases. Bioorg.Med.Chem.Lett. (2012)

Release Date

2012-07-11

Peptides

Serine/threonine-protein kinase pim-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase pim-1

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