SMTL ID : 4e76.1

Apo crystal structure of HCV NS5B genotype 2A JFH-1 isolate with beta hairpin loop deletion

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.50, K.157, R.224 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.50, A:K.157 SO4.2: 4 residues within 4Å: Chain A: P.95, S.98, R.170, K.174 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.98 Salt bridges: A:R.170, A:K.174 SO4.3: 6 residues within 4Å: Chain A: G.377, P.378, R.379, G.380, R.381, R.383 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.379, A:R.381 Salt bridges: A:R.379, A:R.381, A:R.383 SO4.4: 8 residues within 4Å: Chain A: R.424, F.466, S.467, M.468, H.469, N.521, W.522, K.527 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.466 Water bridges: A:N.521 Salt bridges: A:R.424, A:H.469, A:K.527 SO4.5: 4 residues within 4Å: Chain A: R.499, V.524, K.525, T.526 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.525, A:T.526, A:T.526 Salt bridges: A:R.499 SO4.6: 2 residues within 4Å: Chain A: S.504, R.508 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.504, A:S.504 Salt bridges: A:R.508 SO4.7: 6 residues within 4Å: Chain A: P.96, R.100, G.106, A.107, K.108, E.109 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.100, A:K.108 Water bridges: A:A.107, A:A.107

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.8: 4 residues within 4Å: Chain A: F.147, S.369, R.388, T.392 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.369, A:R.388, A:R.388, A:T.392, A:T.392

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mosley, R.T. et al., Structure of hepatitis C virus polymerase in complex with primer-template RNA. J.Virol. (2012)

Release Date

2012-04-18

Peptides

RNA-directed RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-directed RNA polymerase

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