SMTL ID : 4e7a.1

Crystal structure of a product state assembly of HCV NS5B genotype 2a JFH-1 isolate with beta hairpin deletion bound to primer-template RNA with a 2',3'-ddC

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

monomer

Ligands

2 x U- G- G- C- DOC: 5'-R(*CP*AP*UP*GP*GP*C)-D(P*(DOC))-3'(Non-covalent)

U-G-G-C-DOC.1: 19 residues within 4Å: Chain A: P.95, H.97, S.98, A.99, R.100, I.162, Y.164, R.170, K.174, Q.182, S.284, G.285, V.286, L.287, S.290 Ligands: U-G-G-C-DOC.2, U-G-G-C-DOC.2, U-G-G-C-DOC.2, U-G-G-C-DOC.2 No protein-ligand interaction detected (PLIP) U-G-G-C-DOC.2: 15 residues within 4Å: Chain A: E.145, R.160, S.369, R.388, R.396, H.404, N.408, S.409, G.412, Q.416, G.446 Ligands: U-G-G-C-DOC.1, U-G-G-C-DOC.1, U-G-G-C-DOC.1, U-G-G-C-DOC.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.145, A:S.369 pi-Cation interactions: A:R.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mosley, R.T. et al., Structure of hepatitis C virus polymerase in complex with primer-template RNA. J.Virol. (2012)

Release Date

2012-04-18

Peptides

RNA-directed RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

RNA-directed RNA polymerase

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