SMTL ID : 4e78.1

Crystal structure of a product state assembly of HCV NS5B genotype 2a JFH-1 isolate with beta hairpin loop deletion bound to primer-template RNA with 3'-dG

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

2 x A- C- C- G- GDO: 5'-R(*U*AP*CP*CP*GP*(GDO))-3'(Non-covalent)

A-C-C-G-GDO.1: 21 residues within 4Å: Chain A: C.16, P.95, H.97, S.98, A.99, M.141, I.162, Y.164, R.170, K.174, Q.182, F.195, S.284, G.285, V.286, L.287, S.290 Ligands: A-C-C-G-GDO.2, A-C-C-G-GDO.2, A-C-C-G-GDO.2, A-C-C-G-GDO.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.182 A-C-C-G-GDO.2: 17 residues within 4Å: Chain A: R.160, I.162, D.227, S.284, S.369, R.388, R.396, H.404, N.408, S.409, G.412, N.413, Q.416 Ligands: A-C-C-G-GDO.1, A-C-C-G-GDO.1, A-C-C-G-GDO.1, A-C-C-G-GDO.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.227, A:S.284 Salt bridges: A:R.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mosley, R.T. et al., Structure of hepatitis C virus polymerase in complex with primer-template RNA. J.Virol. (2012)

Release Date

2012-04-18

Peptides

PROTEIN (RNA-directed RNA polymerase): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PROTEIN (RNA-directed RNA polymerase)

Related Entries With Identical Sequence