SMTL ID : 4eal.1

Co-crystal of AMPK core with ATP soaked with AMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.51 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 12 residues within 4Å: Chain C: M.84, T.86, T.88, D.89, Q.122, P.127, L.128, V.129, I.149, H.150, R.151, P.153 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:T.88, C:D.89, C:Q.122, C:V.129, C:H.150, C:R.151, C:R.151 Water bridges: C:R.151 Salt bridges: C:H.150 AMP.2: 12 residues within 4Å: Chain C: H.150, T.199, I.203, A.204, V.224, S.225, A.226, P.228, I.311, S.313, S.315, D.316 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:T.199, C:T.199, C:A.204, C:A.204, C:S.225, C:S.225, C:S.225, C:S.313, C:S.315, C:D.316 Salt bridges: C:H.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, L. et al., AMP-activated protein kinase undergoes nucleotide-dependent conformational changes. Nat.Struct.Mol.Biol. (2012)

Release Date

2012-06-06

Peptides

5'-AMP-activated protein kinase catalytic subunit alpha-1: A
5'-AMP-activated protein kinase subunit beta-1: B
5'-AMP-activated protein kinase subunit gamma-1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

5'-AMP-activated protein kinase catalytic subunit alpha-1

5'-AMP-activated protein kinase subunit beta-1

5'-AMP-activated protein kinase subunit gamma-1

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