SMTL ID : 4erw.1

CDK2 in complex with staurosporine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x STU: STAUROSPORINE(Non-covalent)

STU.1: 19 residues within 4Å: Chain A: I.18, G.19, G.21, V.26, A.39, K.41, V.72, F.88, E.89, F.90, L.91, H.92, Q.93, D.94, Q.139, N.140, L.142, D.153 Ligands: EDO.4 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.18, A:A.39, A:K.41, A:F.88, A:F.90, A:L.142, A:L.142, A:D.153 Hydrogen bonds: A:L.91

16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: E.232, T.239 Ligand excluded by PLIP EDO.3: 6 residues within 4Å: Chain A: N.280, K.281, R.282, I.283, S.284, A.287 Ligand excluded by PLIP EDO.4: 7 residues within 4Å: Chain A: Y.23, K.41, L.86, D.153, F.154 Ligands: STU.1, EDO.7 Ligand excluded by PLIP EDO.5: 5 residues within 4Å: Chain A: P.110, K.113, D.296, V.297, T.298 Ligand excluded by PLIP EDO.6: 2 residues within 4Å: Chain A: H.68, Q.121 Ligand excluded by PLIP EDO.7: 7 residues within 4Å: Chain A: L.63, I.71, V.72, F.88, D.153, F.154 Ligands: EDO.4 Ligand excluded by PLIP EDO.8: 5 residues within 4Å: Chain A: P.108, P.110, L.111, P.300, V.301 Ligand excluded by PLIP EDO.9: 5 residues within 4Å: Chain A: C.185, Y.187, Y.188, S.189, P.279 Ligand excluded by PLIP EDO.10: 3 residues within 4Å: Chain A: W.175, R.208, A.209 Ligand excluded by PLIP EDO.11: 7 residues within 4Å: Chain A: T.22, D.135, K.137, N.140, D.153, F.154, G.155 Ligand excluded by PLIP EDO.12: 4 residues within 4Å: Chain A: I.217, D.218, F.221, R.225 Ligand excluded by PLIP EDO.13: 6 residues within 4Å: Chain A: V.171, V.172, T.173, L.174, W.175, G.213 Ligand excluded by PLIP EDO.14: 3 residues within 4Å: Chain A: F.90, L.91, H.92 Ligand excluded by PLIP EDO.15: 7 residues within 4Å: Chain A: F.117, L.289, A.290, H.291, P.292, F.294, Q.295 Ligand excluded by PLIP EDO.16: 2 residues within 4Å: Chain A: I.57, H.79 Ligand excluded by PLIP EDO.17: 6 residues within 4Å: Chain A: L.109, K.113, D.264, D.266, P.292, F.293 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martin, M.P. et al., A Novel Approach to the Discovery of Small-Molecule Ligands of CDK2. Chembiochem (2012)

Release Date

2012-08-22

Peptides

Cyclin-dependent kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cyclin-dependent kinase 2

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