SMTL ID : 4f7n.1

Crystal structure of human CDK8/CYCC in complex with compound 11 (1-[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol-5-yl]-3-(5-hydroxypentyl)urea)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 0SV: 1-[3-tert-butyl-1-(4-methylphenyl)-1H-pyrazol-5-yl]-3-(5-hydroxypentyl)urea(Non-covalent)

0SV.1: 20 residues within 4Å: Chain A: Y.34, A.52, K.54, S.64, R.67, E.68, L.72, L.75, V.80, I.81, F.99, D.100, Y.101, A.102, H.151, L.160, I.173, A.174, D.175, M.176 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:Y.34, A:A.52, A:E.68, A:L.75, A:V.80, A:I.81, A:F.99, A:F.99, A:L.160, A:I.173, A:D.175 Hydrogen bonds: A:K.54, A:E.68, A:A.102, A:D.175

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: R.73, E.74, K.76 Chain B: Q.11, S.13, Q.17 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.17, A:R.73 EDO.3: 6 residues within 4Å: Chain B: K.3, A.4, A.6, I.155, V.156, Y.157 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.3, B:V.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schneider, E.V. et al., Structure-kinetic relationship study of CDK8/CycC specific compounds. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-05-01

Peptides

Cyclin-dependent kinase 8: A
Cyclin-C: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cyclin-dependent kinase 8

Cyclin-C

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