SMTL ID : 4fip.1

Structure of the SAGA Ubp8(S144N)/Sgf11(1-72, Delta-ZnF)/Sus1/Sgf73 DUB module

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.69 Å

Oligo State

hetero-2-2-2-2-mer

Ligands

14 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.9, H.11, C.101, C.104 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.9, A:H.11, A:C.101, A:C.104 ZN.2: 4 residues within 4Å: Chain A: C.51, C.54, C.73, H.78 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.51, A:C.54, A:C.73, A:H.78 ZN.3: 4 residues within 4Å: Chain A: C.65, C.68, H.82, H.88 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.65, A:C.68, A:H.82, A:H.88 ZN.4: 4 residues within 4Å: Chain A: H.255, C.276, C.278, H.281 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.255, A:C.276, A:C.278 ZN.5: 4 residues within 4Å: Chain A: H.175, C.179, C.187, C.190 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.179, A:C.187, A:C.190 ZN.6: 4 residues within 4Å: Chain A: C.294, C.297, C.341, C.344 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.294, A:C.297, A:C.341, A:C.344 ZN.7: 3 residues within 4Å: Chain D: C.78, C.81, H.93 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.78, D:C.81, D:H.93 ZN.8: 4 residues within 4Å: Chain E: H.175, C.179, C.187, C.190 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:H.175, E:C.179, E:C.187, E:C.190 ZN.9: 4 residues within 4Å: Chain E: H.255, C.276, C.278, H.281 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:H.255, E:C.276, E:C.278 ZN.10: 4 residues within 4Å: Chain E: C.51, C.54, C.73, H.78 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.51, E:C.54, E:C.73, E:H.78 ZN.11: 4 residues within 4Å: Chain E: C.294, C.297, C.341, C.344 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.294, E:C.297, E:C.341, E:C.344 ZN.12: 4 residues within 4Å: Chain E: C.65, C.68, H.82, H.88 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.65, E:C.68, E:H.82, E:H.88 ZN.13: 4 residues within 4Å: Chain E: C.9, H.11, C.101, C.104 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.9, E:H.11, E:C.101, E:C.104 ZN.14: 3 residues within 4Å: Chain H: C.78, C.81, H.93 4 PLIP interactions: 3 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:C.78, H:C.81, H:H.93, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Samara, N.L. et al., A Role for Intersubunit Interactions in Maintaining SAGA Deubiquitinating Module Structure and Activity. Structure (2012)

Release Date

2012-07-25

Peptides

Ubiquitin carboxyl-terminal hydrolase 8: AE
Protein SUS1: BF
SAGA-associated factor 11: CG
SAGA-associated factor 73: DH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

Ubiquitin carboxyl-terminal hydrolase 8

Protein SUS1

SAGA-associated factor 11

SAGA-associated factor 73

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