- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.82 Å
- Oligo State
- hetero-oligomer
- Ligands
- 16 x ZN: ZINC ION(Non-covalent)
ZN.1: 4 residues within 4Å:- Chain K: C.47, C.50, C.69, H.74
4 PLIP interactions:4 interactions with chain K- Metal complexes: K:C.47, K:C.50, K:C.69, K:H.74
ZN.2: 4 residues within 4Å:- Chain K: C.61, C.64, H.78, H.84
3 PLIP interactions:3 interactions with chain K- Metal complexes: K:C.61, K:C.64, K:H.78
ZN.3: 4 residues within 4Å:- Chain K: C.5, H.7, C.97, C.100
4 PLIP interactions:4 interactions with chain K- Metal complexes: K:C.5, K:H.7, K:C.97, K:C.100
ZN.4: 4 residues within 4Å:- Chain K: H.171, C.175, C.183, C.186
4 PLIP interactions:4 interactions with chain K- Metal complexes: K:H.171, K:C.175, K:C.183, K:C.186
ZN.5: 4 residues within 4Å:- Chain K: H.251, C.272, C.274, H.277
4 PLIP interactions:4 interactions with chain K- Metal complexes: K:H.251, K:C.272, K:C.274, K:H.277
ZN.6: 4 residues within 4Å:- Chain K: C.290, C.293, C.337, C.340
4 PLIP interactions:4 interactions with chain K- Metal complexes: K:C.290, K:C.293, K:C.337, K:C.340
ZN.7: 5 residues within 4Å:- Chain M: C.73, N.75, C.76, H.88, C.92
3 PLIP interactions:3 interactions with chain M- Metal complexes: M:C.73, M:C.76, M:C.92
ZN.8: 4 residues within 4Å:- Chain O: C.78, C.81, H.93, C.98
4 PLIP interactions:4 interactions with chain O- Metal complexes: O:C.78, O:C.81, O:H.93, O:C.98
ZN.9: 4 residues within 4Å:- Chain P: C.290, G.292, C.293, C.340
3 PLIP interactions:3 interactions with chain P- Metal complexes: P:C.290, P:C.293, P:C.340
ZN.10: 4 residues within 4Å:- Chain P: C.272, E.273, C.274, H.277
2 PLIP interactions:2 interactions with chain P- Metal complexes: P:C.272, P:C.274
ZN.11: 5 residues within 4Å:- Chain P: H.171, C.175, R.178, C.183, C.186
4 PLIP interactions:4 interactions with chain P- Metal complexes: P:H.171, P:C.175, P:C.183, P:C.186
ZN.12: 5 residues within 4Å:- Chain P: C.5, P.6, H.7, C.97, C.100
4 PLIP interactions:4 interactions with chain P- Metal complexes: P:C.5, P:H.7, P:C.97, P:C.100
ZN.13: 5 residues within 4Å:- Chain P: C.61, Q.63, C.64, H.78, H.84
4 PLIP interactions:4 interactions with chain P- Metal complexes: P:C.61, P:C.64, P:H.78, P:H.84
ZN.14: 5 residues within 4Å:- Chain P: C.47, C.50, C.69, H.72, H.74
5 PLIP interactions:5 interactions with chain P- Metal complexes: P:C.47, P:C.50, P:C.69, P:H.72, P:H.74
ZN.15: 5 residues within 4Å:- Chain R: C.73, N.75, C.76, H.88, C.92
4 PLIP interactions:4 interactions with chain R- Metal complexes: R:C.73, R:C.76, R:H.88, R:C.92
ZN.16: 4 residues within 4Å:- Chain T: C.78, C.81, H.93, C.98
4 PLIP interactions:4 interactions with chain T- Metal complexes: T:C.78, T:C.81, T:H.93, T:C.98
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Morgan, M.T. et al., Structural basis for histone H2B deubiquitination by the SAGA DUB module. Science (2016)
- Release Date
- 2016-02-24
- Peptides
- Histone H3.2: AE
Histone H4: BF
Histone H2A type 1: CG
Histone H2B 1.1: DH
Ubiquitin carboxyl-terminal hydrolase 8: KP
Transcription and mRNA export factor SUS1: LQ
SAGA-associated factor 11: MR
Polyubiquitin-B: NS
SAGA-associated factor 73: OT - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AE
EB
BF
FC
CG
GD
DH
HK
UP
ZL
VQ
aM
WR
bN
XS
cO
YT
d
SMTL ID : 4zux.1 (1 other biounit)
SAGA DUB module Ubp8/Sgf11/Sus1/Sgf73 bound to ubiqitinated nucleosome
Histone H3.2
Histone H4
Histone H2A type 1
Histone H2B 1.1
Ubiquitin carboxyl-terminal hydrolase 8
Transcription and mRNA export factor SUS1
SAGA-associated factor 11
Polyubiquitin-B
Toggle Identical (NS)SAGA-associated factor 73
Related Entries With Identical Sequence
1aar.1 | 1cmx.1 | 1d3z.1 | 1eqz.1 | 1f66.1 | 1f9j.1 | 1fxt.1 | 1g6j.1 | 1hq3.1 | 1nbf.1 | 1nbf.2 | 1ogw.1 | 1p3q.1 | 1p3q.2 | 1q5w.1 | 1s1q.1 | 1s1q.2 | 1tbe.1 | 1tzy.1 | 1u35.1 | 1ubi.1 | 1ubq.1 | 1uzx.1 | 1v80.1 | 1v81.1 | 1wr6.1 | 1wr6.2 | 1wr6.3 | 1wr6.4 | 1wrd.1 more...less...1wrd.2 | 1xqq.1 | 1yd8.1 | 1yd8.2 | 2aro.1 | 2ayo.1 | 2ayo.2 | 2bgf.1 | 2c7m.1 | 2c7n.1 | 2c7n.2 | 2c7n.3 | 2c7n.4 | 2c7n.5 | 2c7n.6 | 2cv5.1 | 2d3g.1 | 2den.1 | 2dx5.1 | 2f8n.1 | 2fid.1 | 2fif.1 | 2fif.2 | 2fif.3 | 2fuh.1 | 2g45.1 | 2g45.2 | 2gmi.1 | 2hd5.1 | 2hth.1 | 2jf5.1 | 2jri.1 | 2jy6.1 | 2jzz.1 | 2k39.1 | 2k8b.1 | 2k8c.1 | 2kde.1 | 2kdf.1 | 2klg.1 | 2kn5.1 | 2kox.1 | 2ktf.1 | 2kwu.1 | 2kwv.1 | 2l0f.1 | 2l0t.1 | 2l3z.1 | 2lj5.1 | 2lvo.1 | 2lvp.1 | 2lvq.1 | 2lz6.1 | 2mbh.1 | 2mbo.1 | 2mbq.1 | 2mcn.1 | 2mj5.1 | 2mjb.1 | 2mor.1 | 2mro.1 | 2n3u.1 | 2n3v.1 | 2n3w.1 | 2nr2.1 | 2o6v.1 | 2o6v.2 | 2o6v.3 | 2oob.1 | 2pe9.1 | 2pea.1 | 2qho.1 | 2qho.2 | 2qho.3 | 2qho.4 | 2rr9.1 | 2wwz.1 | 2wx0.1 | 2wx0.2 | 2wx1.1 | 2xbb.1 | 2xbb.2 | 2xew.1 | 2xew.2 | 2xew.3 | 2xk5.1 | 2z59.1 | 2zcc.1 | 2zcc.2 | 2zcc.3 | 2zcc.4 | 3a33.1 | 3alb.1 | 3aul.1 | 3eec.1 | 3eec.2 | 3eec.3 | 3eec.4 | 3efu.1 | 3ehv.1 | 3ehv.2 | 3ehv.3 | 3fwb.1 | 3fwc.1 | 3fwc.2 | 3fwc.3 | 3fwc.4 | 3h1u.1 | 3h1u.2 | 3h7p.1 | 3h7s.1 | 3h7s.2 | 3h7s.3 | 3hm3.1 | 3hm3.2 | 3hm3.3 | 3hm3.4 | 3kik.1 | 3kik.2 | 3kik.3 | 3kik.4 | 3kjl.1 | 3kjl.2 | 3kjl.3 | 3kjl.4 | 3lel.1 | 3lel.2 | 3m3j.1 | 3m3j.2 | 3m3j.3 | 3m99.1 | 3mhh.1 | 3mhs.1 | 3n30.1 | 3n30.2 | 3n32.1 | 3nhe.1 | 3nqu.1 | 3ns8.1 | 3ns8.2 | 3ns8.3 | 3ofi.1 | 3ofi.2 | 3phd.1 | 3r45.1 | 3tbl.1 | 3tmp.1 | 3tmp.2 | 3tmp.3 | 3tmp.4 | 3ugb.1 | 3vht.1 | 3vuw.1 | 3vuw.2 | 3vuw.3 | 3vux.1 | 3vux.2 | 3vux.3 | 3vuy.1 | 3vuy.2 | 3vuy.3 | 4bbn.1 | 4bos.1 | 4boz.1 | 4boz.2 | 4boz.3 | 4bvu.1 | 4c31.1 | 4ddg.1 | 4ddg.2 | 4ddi.1 | 4dhj.1 | 4dhj.2 | 4dhj.4 | 4dhj.5 | 4dhz.1 | 4fip.1 | 4fjc.1 | 4fk5.1 | 4hga.1 | 4jqw.1 | 4k7s.1 | 4k7s.2 | 4k7s.3 | 4k7u.1 | 4k7u.2 | 4k7u.3 | 4k7w.1 | 4k7w.2 | 4k7w.3 | 4kgc.1 | 4ld9.1 | 4ldt.1 | 4ljo.1 | 4ljp.1 | 4m0w.1 | 4mbe.1 | 4mbe.2 | 4mm3.1 | 4s1z.1 | 4s1z.2 | 4s1z.3 | 4s1z.4 | 4s1z.5 | 4s22.1 | 4s22.2 | 4un2.1 | 4w4u.1 | 4w4u.2 | 4wa6.1 | 4wa6.2 | 4wa6.3 | 4wlr.1 | 4wur.1 | 4wzp.1 | 4wzp.2 | 4wzp.3 | 4wzp.4 | 4wzp.5 | 4wzp.6 | 4wzp.7 | 4wzp.8 | 4xkh.1 | 4xkh.2 | 4xkh.3 | 4xof.1 | 4xok.1 | 4xok.2 | 4xok.3 | 4xol.1 | 4xol.2 | 4xyz.1 | 4y1h.1 | 4z2m.1 | 4z9s.1 | 4zux.2 | 5a5b.1 | 5ait.1 | 5aiu.1 | 5bz0.1 | 5c3i.1 | 5c3i.2 | 5c3i.3 | 5c3i.4 | 5c3i.5 | 5c3i.6 | 5d0k.1 | 5d0k.2 | 5d0k.3 | 5d0k.4 | 5d0m.1 | 5dfl.1 | 5e5a.1 | 5edv.1 | 5edv.2 | 5edv.3 | 5eya.1 | 5fer.1 | 5gjq.1 | 5go7.1 | 5go8.1 | 5gob.1 | 5goc.1 | 5god.1 | 5gog.1 | 5goh.1 | 5goi.1 | 5goj.1 | 5gok.1 | 5h7s.1 | 5j8p.1 | 5jbv.1 | 5jby.1 | 5jqs.1 | 5jtj.1 | 5jtj.2 | 5jtv.1 | 5jtv.2 | 5jtv.3 | 5jtv.4 | 5jtv.5 | 5jtv.6 | 5jtv.7 | 5k9p.1 | 5kgf.1 | 5kyc.1 | 5kyd.1 | 5kye.1 | 5kye.2 | 5kyf.1 | 5mn9.1 | 5nmc.1 | 5nmc.2 | 5nmc.3 | 5nvg.1 | 5o9g.1 | 5ohl.1 | 5ohl.2 | 5ohl.3 | 5ohl.4 | 5ohl.5 | 5ohl.6 | 5ohl.7 | 5ohp.1 | 5ohv.1 | 5omx.1 | 5ong.1 | 5onw.1 | 5oxv.1 | 5oy7.1 | 5tut.1 | 5txk.1 | 5ujl.1 | 5ujn.1 | 5ulf.1 | 5ulf.2 | 5ulh.1 | 5ulk.1 | 5v1y.1 | 5v1y.2 | 5v1z.1 | 5v1z.2 | 5vey.1 | 5vf0.1 | 5vnz.1 | 5vnz.2 | 5vo0.1 | 5vzm.1 | 5wfi.1 | 5wfi.2 | 5x0x.1 | 5x3m.1 | 5x3n.1 | 5x3o.1 | 5xbo.1 | 5xdp.2 | 5xf3.1 | 5xf4.1 | 5xf5.1 | 5xiu.1 | 5xk4.1 | 5xk5.1 | 5xpk.1 | 5xu8.1 | 5xve.1 | 5ymy.1 | 5zbu.2 | 6aqr.1 | 6asr.1 | 6asr.2 | 6b7m.1 | 6b7o.1 | 6buz.1 | 6djx.1 | 6e0c.1 | 6e0p.1 | 6e2b.1 | 6ftx.1 | 6g0l.1 | 6hts.1 | 6i84.1 | 6if1.1 | 6if1.2 | 6isu.1 | 6j99.1 | 6jb6.1 | 6jb7.1 | 6jma.1 | 6jwi.1 | 6k9p.1 | 6kl4.1 | 6kow.1 | 6kox.1 | 6kw3.1 | 6kw4.1 | 6kw5.1 | 6l9z.1 | 6la2.1 | 6la8.1 | 6la9.1 | 6lab.1 | 6ler.1 | 6ler.2 | 6lp2.1 | 6ltj.1 | 6m3v.1 | 6m44.1 | 6m4d.1 | 6m4g.1 | 6m4h.1 | 6n13.1 | 6n1z.1 | 6n1z.2 | 6ne3.1 | 6nxk.1 | 6nxk.2 | 6nzo.1 | 6o1d.1 | 6o22.1 | 6o96.1 | 6oi4.1 | 6oi4.2 | 6om3.1 | 6om3.2 | 6p5b.1 | 6pa7.1 | 6pwv.1 | 6pww.1 | 6pwx.1 | 6px1.1 | 6px3.1 | 6q00.1 | 6q01.1 | 6q01.2 | 6qml.1 | 6qml.2 | 6r0c.1 | 6r8y.1 | 6rny.1 | 6rya.1 | 6rya.2 | 6rya.3 | 6ryr.1 | 6ryu.1 | 6s53.1 | 6s53.2 | 6se0.1 | 6se6.1 | 6see.1 | 6sef.1 | 6seg.1 | 6sqr.1 | 6t79.1 | 6t7a.1 | 6t7b.1 | 6t7c.1 | 6t7d.1 | 6t9l.1 | 6tbm.1 | 6tem.1 | 6tnf.1 | 6ttu.1 | 6tuv.1 | 6tuv.2 | 6txb.1 | 6txb.2 | 6upk.1 | 6upl.1 | 6v5d.1 | 6v92.1 | 6vae.1 | 6vaf.1 | 6vz4.1 | 6w5i.1 | 6w5m.1 | 6w5n.1 | 6w9d.1 | 6w9d.2 | 6w9d.3 | 6wjd.1 | 6wkr.1 | 6wtg.1 | 6y5d.1 | 6z7v.1 | 6zhx.1 | 6zhy.1 | 7bbd.1 | 7bbf.1 | 7cap.1 | 7dbp.1 | 7dni.1 | 7dnj.1 | 7f0u.1 | 7f0u.2 | 7f7x.1 | 7jo9.1 | 7joa.1 | 7jxv.1 | 7k5x.1 | 7k5y.1 | 7k60.1 | 7k61.1 | 7k63.1 | 7kbd.1 | 7kbe.1 | 7kbf.1 | 7keo.1 | 7keo.2 | 7m1x.1 | 7m4m.1 | 7m4m.2 | 7m4n.1 | 7m4n.2 | 7m4o.1 | 7mbm.1 | 7mbn.1 | 7myf.2 | 7nkx.1 | 7nky.1 | 7nl0.1 | 7npi.1 | 7npi.2 | 7npi.3 | 7npi.4 | 7npi.5 | 7npi.6 | 7npi.7 | 7ojx.1 | 7otq.1 | 7owd.2 | 7qo6.1 | 7r5r.1 | 7r71.1 | 7tan.1 | 7u46.1 | 7u47.1 | 7u4d.1 | 7uv5.1 | 7vdt.1 | 7vdv.1 | 7w38.1 | 7w39.1 | 7w3a.1 | 7w3b.1 | 7w3c.1 | 7w3f.1 | 7w3g.1 | 7w3h.1 | 7w3i.1 | 7w3j.1 | 7w3k.1 | 7w3m.1 | 7xcr.1 | 7xct.1 | 7xd0.1 | 7ywx.1 | 7yyh.1