- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-10-mer
- Ligands
- 1 x NAG- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 14 x GOL: GLYCEROL(Non-functional Binders)
- 10 x CL: CHLORIDE ION(Non-functional Binders)
CL.3: 6 residues within 4Å:- Chain A: N.131, H.133, S.215, I.216, Q.217
- Ligands: GOL.2
Ligand excluded by PLIPCL.5: 6 residues within 4Å:- Chain B: N.131, H.133, S.215, I.216, Q.217
- Ligands: GOL.4
Ligand excluded by PLIPCL.7: 6 residues within 4Å:- Chain C: N.131, H.133, S.215, I.216, Q.217
- Ligands: GOL.6
Ligand excluded by PLIPCL.9: 6 residues within 4Å:- Chain D: N.131, H.133, S.215, I.216, Q.217
- Ligands: GOL.8
Ligand excluded by PLIPCL.12: 6 residues within 4Å:- Chain E: N.131, H.133, S.215, I.216, Q.217
- Ligands: GOL.11
Ligand excluded by PLIPCL.14: 6 residues within 4Å:- Chain F: N.131, H.133, S.215, I.216, Q.217
- Ligands: GOL.13
Ligand excluded by PLIPCL.19: 6 residues within 4Å:- Chain G: N.131, H.133, S.215, I.216, Q.217
- Ligands: GOL.17
Ligand excluded by PLIPCL.23: 6 residues within 4Å:- Chain H: N.131, H.133, S.215, I.216, Q.217
- Ligands: GOL.22
Ligand excluded by PLIPCL.25: 6 residues within 4Å:- Chain I: N.131, H.133, S.215, I.216, Q.217
- Ligands: GOL.24
Ligand excluded by PLIPCL.27: 6 residues within 4Å:- Chain J: N.131, H.133, S.215, I.216, Q.217
- Ligands: GOL.26
Ligand excluded by PLIP- 2 x SIA: N-acetyl-alpha-neuraminic acid(Non-covalent)
SIA.10: 6 residues within 4Å:- Chain E: W.45, Y.50, D.51, K.264, S.266, K.268
9 PLIP interactions:9 interactions with chain E- Hydrophobic interactions: E:Y.50
- Hydrogen bonds: E:D.51, E:K.264, E:S.266
- Water bridges: E:Y.112, E:S.266, E:K.268, E:K.268
- Salt bridges: E:K.268
SIA.20: 7 residues within 4Å:- Chain H: W.45, Y.50, D.51, D.114, K.264, S.266, K.268
9 PLIP interactions:9 interactions with chain H- Hydrophobic interactions: H:Y.50
- Hydrogen bonds: H:D.51, H:K.264, H:S.266, H:K.268
- Water bridges: H:D.114, H:D.114, H:S.266
- Salt bridges: H:K.268
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Neu, U. et al., Structures of Merkel Cell Polyomavirus VP1 Complexes Define a Sialic Acid Binding Site Required for Infection. Plos Pathog. (2012)
- Release Date
- 2012-09-05
- Peptides
- VP1: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
KG
LH
MI
NJ
O
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-10-mer
- Ligands
- 1 x NAG- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 14 x GOL: GLYCEROL(Non-functional Binders)
- 10 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x SIA: N-acetyl-alpha-neuraminic acid(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Neu, U. et al., Structures of Merkel Cell Polyomavirus VP1 Complexes Define a Sialic Acid Binding Site Required for Infection. Plos Pathog. (2012)
- Release Date
- 2012-09-05
- Peptides
- VP1: ABCDEFGHIJ
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
KG
LH
MI
NJ
O