- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.54 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 5 x CA: CALCIUM ION(Non-covalent)
CA.3: 4 residues within 4Å:- Chain A: T.23, D.25, D.100, E.102
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.25, A:D.25, A:D.100, A:D.100, A:E.102
CA.4: 6 residues within 4Å:- Chain A: D.76, G.77, S.79, L.81, D.99, E.102
6 PLIP interactions:6 interactions with chain A- Metal complexes: A:D.76, A:G.77, A:S.79, A:L.81, A:D.99, A:E.102
CA.5: 5 residues within 4Å:- Chain A: A.58, D.59, N.91, G.93, D.95
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.59, A:N.91, A:G.93, A:D.95, H2O.6
CA.6: 4 residues within 4Å:- Chain A: D.188, D.232, S.280, D.329
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.188, A:S.280, A:D.329, H2O.1, H2O.9
CA.7: 5 residues within 4Å:- Chain A: I.190, A.234, A.282, V.331
- Ligands: CL.8
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:I.190, A:A.234, A:A.282, A:V.331, H2O.6
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 11 x PGO: S-1,2-PROPANEDIOL(Non-covalent)
PGO.9: 1 residues within 4Å:- Chain A: D.287
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.287
- Water bridges: A:G.336
PGO.10: 4 residues within 4Å:- Chain A: D.287, T.288, G.289, T.305
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:T.305
PGO.11: 1 residues within 4Å:- Chain A: K.67
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.67
PGO.12: 5 residues within 4Å:- Chain A: Y.337, S.350, W.352, S.353, V.357
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:W.352
- Hydrogen bonds: A:Y.337, A:S.353
PGO.13: 5 residues within 4Å:- Chain A: F.149, M.150, P.175, R.203
- Ligands: PGO.14
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:F.149
- Hydrogen bonds: A:R.203
- Water bridges: A:M.150
PGO.14: 8 residues within 4Å:- Chain A: G.134, L.136, T.144, F.149, P.152, R.203, L.219
- Ligands: PGO.13
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:T.144, A:F.149, A:P.152
- Hydrogen bonds: A:R.203, A:R.203
- Water bridges: A:G.134, A:A.135, A:R.203
PGO.15: 3 residues within 4Å:- Chain A: N.335, G.336, W.352
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:W.352
PGO.16: 2 residues within 4Å:- Chain A: S.364, W.367
4 PLIP interactions:4 interactions with chain A- Water bridges: A:S.364, A:S.364, A:S.364, A:S.364
PGO.17: 4 residues within 4Å:- Chain A: T.177, P.178, D.179, L.185
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.177, A:D.179
PGO.18: 6 residues within 4Å:- Chain A: N.112, Y.143, G.145, K.146, S.147, F.149
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:F.149
- Hydrogen bonds: A:N.112
- Water bridges: A:K.37
PGO.19: 3 residues within 4Å:- Chain A: Q.298, P.314, L.316
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:P.314, A:L.316
- Water bridges: A:Q.298
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stura, E.A. et al., Crystal structure of full-length human collagenase 3 (MMP-13) with peptides in the active site defines exosites in the catalytic domain. Faseb J. (2013)
- Release Date
- 2013-08-21
- Peptides
- Collagenase 3: A
Collagenase 3, pro-domain peptide: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
W
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.54 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 5 x CA: CALCIUM ION(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- 11 x PGO: S-1,2-PROPANEDIOL(Non-covalent)
- 1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stura, E.A. et al., Crystal structure of full-length human collagenase 3 (MMP-13) with peptides in the active site defines exosites in the catalytic domain. Faseb J. (2013)
- Release Date
- 2013-08-21
- Peptides
- Collagenase 3: A
Collagenase 3, pro-domain peptide: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
W